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14 Article(s) on File
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HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
Weyn-Vanhentenryck SM,
Mele A,
Yan Q,
Sun S,
Farny N,
Zhang Z,
Xue C,
Herre M,
Silver PA,
Zhang MQ,
Krainer AR,
Darnell RB,
Zhang C

Cell Reports
  6 (6): 1139-1152; Mar 27 2014   NLM
[Abstract]
[DOI] [Full Text]

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
Bernard D,
Prasanth KV,
Tripathi V,
Colasse S,
Nakamura T,
Xuan Z,
Zhang MQ,
Sedel F,
Jourdren L,
Coulpier F,
Triller A,
Spector DL,
Bessis A

EMBO Journal
  (0): 1-12; 2010   PMC2944070
[Abstract]
[DOI] [Full Text] [PDF]

Dual-specificity splice sites function alternatively as 5 and 3 splice sites
Zhang CL,
Hastings ML,
Krainer AR,
Zhang MQ

Proc Natl Acad Sci U S A
  104 (38): 15028-15033; Sep 2007   PMCID: PMC1986607
[Abstract]
[DOI] [Full Text] [PDF]

Neighbor number, valley seeking and clustering
Zhang C,
Zhang X,
Zhang MQ,
Li Y

Pattern Recognition Letters
  28 (2): 173-180; Jan 2007  
[Abstract]
[DOI] [Full Text]

Predictive models in gene regulation
Das D,
Zhang MQ

Methods Mol Biol
  377 (0): 95-110; 2007  


Pan-genome isolation of low abundance transcripts using SAGE tag
Kim YC,
Jung Y,
Xuan Z,
Dong H,
Zhang MQ,
Wang SM

Febs Letters
  580 (28): 6721-6729; Dec 2006  
[Abstract]
[DOI] [Full Text] [PDF]

An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers
Smith PJ,
Zhang C,
Wang J,
Chew SL,
Zhang MQ,
Krainer AR

Hum Mol Genet
  15 (16): 2490-508; Aug 15 2006  
[Abstract]
[DOI] [Full Text] [PDF]

DNA motifs in human and mouse proximal promoters predict tissue-specific expression
Smith AD,
Sumazin P,
Xuan Z,
Zhang MQ

Proc Natl Acad Sci U S A
  103 (16): 6275-80; Apr 18 2006  
[Abstract]
[DOI] [Full Text] [PDF]

Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing
Suzuki H,
Zuo Y,
Wang J,
Zhang MQ,
Malhotra A,
Mayeda A

Nucleic Acids Research
  34 (8): 2006  
[Abstract]
[DOI] [Full Text] [PDF]

Large-scale structure of genomic methylation patterns
Rollins RA,
Haghighi F,
Edwards JR,
Das R,
Zhang MQ,
Ju J,
Bestor TH

Genome Research
  16 (2): 157-163; 2006  
[Abstract]
[DOI] [Full Text] [PDF]

A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data
Li J,
Zhang MQ,
Zhang X

American Journal of Human Genetics
  79 (4): 628-639; 2006  
[Abstract]
[DOI] [Full Text] [PDF]

Genome-wide promoter extraction and analysis in human, mouse, and rat
Xuan Z,
Zhao F,
Wang J,
Chen G,
Zhang MQ

Genome Biology
  6 (8): R72; 2005  
[Abstract]
[DOI] [Full Text]

TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies
Zhao F,
Xuan Z,
Liu L,
Zhang MQ

Nucleic Acids Res
  33 (0): D103-7; Jan 1 2005  
[Abstract]
[DOI] [Full Text] [PDF]

Direct coupling of the cell cycle and cell death machinery by E2F
Nahle Z,
Polakoff J,
Davuluri RV,
McCurrach ME,
Jacobson MD,
Narita M,
Zhang MQ,
Lazebnik Y,
Bar-Sagi D,
Lowe SW

Nat Cell Biol
  4 (11): 859-864; 2002  
[Abstract]
[DOI] [Full Text]


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