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7 Article(s) on File
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The developmental transcriptome of Drosophila melanogaster
Graveley BR,
Brooks AN,
Carlson J,
Duff MO,
Landolin JM,
Yang L,
Artieri CG,
van Baren MJ,
Boley N,
Booth BW,
Brown JB,
Cherbas L,
Davis CA,
Dobin A,
Li RH,
Lin W,
Malone JH,
Mattiuzzo NR,
Miller D,
Sturgill D,
Tuch BB,
Zaleski C,
Zhang DY,
Blanchette M,
Dudoit S,
Eads B,
Green RE,
Hammonds A,
Jiang LC,
Kapranov P,
Langton L,
Perrimon N,
Sandler JE,
Wan KH,
Willingham A,
Zhang Y,
Zou Y,
Andrews J,
Bickel PJ,
Brenner SE,
Brent MR,
Cherbas P,
Gingeras TR,
Hoskins RA,
Kaufman TC,
Oliver B,
Celniker SE

Nature
  471 (7339): 473-479; Mar 2011   ISI PMC3075879
[Abstract]
[DOI]

The transcriptional diversity of 25 Drosophila cell lines
Cherbas L,
Willingham A,
Zhang D,
Yang L,
Zou Y,
Eads BD,
Carlson JW,
Landolin JM,
Kapranov P,
Dumais J,
Samsonova A,
Choi JH,
Roberts J,
Davis CA,
Tang H,
Van Baren MJ,
Ghosh S,
Dobin A,
Bell KG,
Lin W,
Langton L,
Duff MO,
Tenney AE,
Zaleski C,
Brent MR,
Hoskins RA,
Kaufman TC,
Andrews J,
Graveley BR,
Perrimon N,
Celniker SE,
Gingeras TR,
Cherbas P

Genome Research
  21 (2): 301-314; 2011   Elsevier PMC3032933
[Abstract]
[DOI]

Post-transcriptional processing generates a diversity of 5-modified long and short RNAs
Fejes-Toth K,
Sotirova V,
Sachidanandam R,
Assaf G,
Hannon GJ,
Kapranov P,
Foissac S,
Willingham AT,
Duttagupta R,
Dumais E,
Gingeras TR

Nature
  457 (7232): 1028-1032; Feb 2009   PMCID: PMC2719882
[Abstract]
[DOI] [Full Text] [PDF]

Genome-wide transcription and the implications for genomic organization
Kapranov P,
Willingham AT,
Gingeras TR

Nature Reviews Genetics
  8 (6): 413-423; 2007  
[Abstract]
[DOI] [Full Text]

RNA maps reveal new RNA classes and a possible function for pervasive transcription
Kapranov P,
Cheng J,
Dike S,
Nix DA,
Duttagupta R,
Willingham AT,
Stadler PF,
Hertel J,
Hackermüller J,
Hofacker IL,
Bell I,
Cheung E,
Drenkow J,
Dumais E,
Patel S,
Helt G,
Ganesh M,
Ghosh S,
Piccolboni A,
Sementchenko V,
Tammana H,
Gingeras TR

Science
  316 (5830): 1484-1488; 2007  
[Abstract]
[DOI]

Transcriptional landscape of the human and fly genomes: Nonlinear and multifunctional modular model of transcriptomes
Willingham AT,
Dike S,
Cheng J,
Manak JR,
Bell I,
Cheung E,
Drenkow J,
Dumais E,
Duttagupta R,
Ganesh M,
Ghosh S,
Helt G,
Nix D,
Piccolboni A,
Sementchenko V,
Tammana H,
Kapranov P,
Gingeras TR

  71 (0): 101-110; 2006  
[Abstract]
[Full Text]

TUF Love for Junk DNA
Willingham AT,
Gingeras TR

Cell
  125 (7): 1215-1220; 2006  
[Abstract]
[DOI] [Full Text]


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