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21 Article(s) on File
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A Chromatin-Dependent Role of the Fragile X Mental Retardation Protein FMRP in the DNA Damage Response
Alpatov R,
Lesch BJ,
Nakamoto-Kinoshita M,
Blanco A,
Chen S,
Stutzer A,
Armache KJ,
Simon MD,
Xu C,
Ali M,
Murn J,
Prisic S,
Kutateladze TG,
Vakoc CR,
Min J,
Kingston RE,
Fischle W,
Warren ST,
Page DC,
Shi Y

Cell
  157 (4): 869-81; May 8 2014   NLM
[Abstract]
[DOI] [Full Text]

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
Banks JA,
Nishiyama T,
Hasebe M,
Bowman JL,
Gribskov M,
Depamphilis C,
Albert VA,
Aono N,
Aoyama T,
Ambrose BA,
Ashton NW,
Axtell MJ,
Barker E,
Barker MS,
Bennetzen JL,
Bonawitz ND,
Chapple C,
Cheng C,
Correa LG,
Dacre M,
Debarry J,
Dreyer I,
Elias M,
Engstrom EM,
Estelle M,
Feng L,
Finet C,
Floyd SK,
Frommer WB,
Fujita T,
Gramzow L,
Gutensohn M,
Harholt J,
Hattori M,
Heyl A,
Hirai T,
Hiwatashi Y,
Ishikawa M,
Iwata M,
Karol KG,
Koehler B,
Kolukisaoglu U,
Kubo M,
Kurata T,
Lalonde S,
Li K,
Li Y,
Litt A,
Lyons E,
Manning G,
Maruyama T,
Michael TP,
Mikami K,
Miyazaki S,
Morinaga S,
Murata T,
Mueller-roeber B,
Nelson DR,
Obara M,
Oguri Y,
Olmstead RG,
Onodera N,
Petersen BL,
Pils B,
Prigge M,
Rensing SA,
Riaño-Pachón DM,
Roberts AW,
Sato Y,
Scheller HV,
Schulz B,
Schulz C,
Shakirov EV,
Shibagaki N,
Shinohara N,
Shippen DE,
Sørensen I,
Sotooka R,
Sugimoto N,
Sugita M,
Sumikawa N,
Tanurdzic M,
Theiben G,
Ulvskov P,
Wakazuki S,
Weng J,
Willats WW,
Wipf D,
Wolf PG,
Yang L,
Zimmer AD,
Zhu Q,
Mitros T,
Hellsten U,
Loqué D,
Otillar R,
Salamov A,
Schmutz J,
Shapiro H,
Lindquist E,
Lucas S,
Rokhsar D,
Grigoriev IV

Science
  332 (6032): 963-966; May 20 2011   PMC3166216
[Abstract]
[DOI]

Evidence for lateral mobility of voltage sensors in prokaryotic voltage-gated sodium channels
Nagura H,
Irie K,
Imai T,
Shimomura T,
Hige T,
Fujiyoshi Y

Biochemical and Biophysical Research Communications
  399 (3): 341-346; Aug 27 2010  
[Abstract]
[DOI] [Full Text] [PDF]

Lid2 Is Required for Coordinating H3K4 and H3K9 Methylation of Heterochromatin and Euchromatin
Li F,
Huarte M,
Zaratiegui BM,
Vaughn MW,
Shi Y,
Martienssen RA,
Cande WZ

Cell
  135 (2): 272-283; Oct 17 2008  
[Abstract]
[DOI] [Full Text] [PDF]

A second generation human haplotype map of over 3.1 million SNPs
Frazer KA,
Ballinger DG,
Cox DR,
Hinds DA,
Stuve LL,
Gibbs RA,
Belmont JW,
Boudreau A,
Hardenbol P,
Leal SM,
Pasternak S,
Wheeler DA,
Willis TD,
Yu FL,
Yang HM,
Zeng CQ,
Gao Y,
Hu HR,
Hu WT,
Li CH,
Lin W,
Liu SQ,
Pan H,
Tang XL,
Wang J,
Wang W,
Yu J,
Zhang B,
Zhang QR,
Zhao HB,
Zhao H,
Zhou J,
Gabriel SB,
Barry R,
Blumenstiel B,
Camargo A,
Defelice M,
Faggart M,
Goyette M,
Gupta S,
Moore J,
Nguyen H,
Onofrio RC,
Parkin M,
Roy J,
Stahl E,
Winchester E,
Ziaugra L,
Altshuler D,
Shen Y,
Yao ZJ,
Huang W,
Chu X,
He YG,
Jin L,
Liu YF,
Shen YY,
Sun WW,
Wang HF,
Wang Y,
Xiong XY,
Xu L,
Waye MM,
Tsui SK,
Wong JT,
Galver LM,
Fan JB,
Gunderson K,
Murray SS,
Oliphant AR,
Chee MS,
Montpetit A,
Chagnon F,
Ferretti V,
Leboeuf M,
Olivier JF,
Phillips MS,
Roumy S,
Sallee C,
Verner A,
Hudson TJ,
Kwok PY,
Cai DM,
Koboldt DC,
Miller RD,
Pawlikowska L,
Taillon-Miller P,
Xiao M,
Tsui LC,
Mak W,
Song YQ,
Tam PK,
Nakamura Y,
Kawaguchi T,
Kitamoto T,
Morizono T,
Nagashima A,
Ohnishi Y,
Sekine A,
Tanaka T,
Tsunoda T,
Deloukas P,
Bird CP,
Delgado M,
Dermitzakis ET,
Gwilliam R,
Hunt S,
Morrison J,
Powell D,
Stranger BE,
Whittaker P,
Bentley DR,
Daly MJ,
de Bakker PI,
Barrett J,
Chretien YR,
Maller J,
McCarroll S,
Patterson N,
Peer I,
Price A,
Purcell S,
Richter DJ,
Sabeti P,
Saxena R,
Schaffner SF,
Sham PC,
Varilly P,
Stein LD,
Krishnan L,
Smith AV,
Tello-Ruiz MK,
Thorisson GA,
Chakravarti A,
Chen PE,
Cutler DJ,
Kashuk CS,
Lin S,
Abecasis GR,
Guan WH,
Li Y,
Munro HM,
Qin ZH,
Thomas DJ,
McVean G,
Auton A,
Bottolo L,
Cardin N,
Eyheramendy S,
Freeman C,
Marchini J,
Myers S,
Spencer C,
Stephens M,
Donnelly P,
Cardon LR,
Clarke G,
Evans DM,
Morris AP,
Weir BS,
Johnson TA,
Mullikin JC

Nature
  449 (7164): 851-U3; Oct 2007  
[Abstract]
[DOI] [Full Text] [PDF]

The fission yeast Jmj2 reverses histone H3 lysine 4 trimethylation
Huarte M,
Lan F,
Kim TH,
Vaughn MW,
Zaratiegui BM,
Martienssen RA,
Buratowski S,
Shi Y

Journal of Biological Chemistry
  282 (30): 21662-21670; Jul 2007  
[Abstract]
[DOI] [Full Text] [PDF]

S-pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription
Lan F,
Zaratiegui M,
Villen J,
Vaughn MW,
Verdel A,
Huarte M,
Shi YJ,
Gygi SP,
Moazed D,
Martienssen RA,
Shi Y

Molecular cell
  26 (1): 89-101; Apr 13 2007  
[Abstract]
[DOI] [Full Text]

S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription
Lan F,
Zaratiegui M,
Villen J,
Vaughn MW,
Verdel A,
Huarte M,
Shi Y,
Gygi SP,
Moazed D,
Martienssen RA

Molecular cell
  26 (1): 89-101; Apr 13 2007  
[Abstract]
[DOI] [Full Text]

The transcriptional landscape of the mammalian genome
Carninci P,
Kasukawa T,
Katayama S,
Gough J,
Frith MC,
Maeda N,
Oyama R,
Ravasi T,
Lenhard B,
Wells C,
Kodzius R,
Shimokawa K,
Bajic VB,
Brenner SE,
Batalov S,
Forrest AR,
Zavolan M,
Davis MJ,
Wilming LG,
Aidinis V,
Allen JE,
Ambesi-Impiombato A,
Apweiler R,
Aturaliya RN,
Bailey TL,
Bansal M,
Baxter L,
Beisel KW,
Bersano T,
Bono H,
Chalk AM,
Chiu KP,
Choudhary V,
Christoffels A,
Clutterbuck DR,
Crowe ML,
Dalla E,
Dalrymple BP,
de Bono B,
della Gatta G,
di Bernardo D,
Down T,
Engstrom P,
Fagiolini M,
Faulkner G,
Fletcher CF,
Fukushima T,
Furuno M,
Futaki S,
Gariboldi M,
Georgii-Hemming P,
Gingeras TR,
Gojobori T,
Green RE,
Gustincich S,
Harbers M,
Hayashi Y,
Hensch TK,
Hirokawa N,
Hill D,
Huminiecki L,
Iacono M,
Ikeo K,
Iwama A,
Ishikawa T,
Jakt M,
Kanapin A,
Katoh M,
Kawasawa Y,
Kelso J,
Kitamura H,
Kitano H,
Kollias G,
Krishnan SP,
Kruger AF,
Kummerfeld SK,
Kurochkin IV,
Lareau LF,
Lazarevic D,
Lipovich L,
Liu J,
Liuni S,
McWilliam S,
Madan Babu M,
Madera M,
Marchionni L,
Matsuda H,
Matsuzawa S,
Miki H,
Mignone F,
Miyake S,
Morris K,
Mottagui-Tabar S,
Mulder N,
Nakano N,
Nakauchi H,
Ng P,
Nilsson R,
Nishiguchi S,
Nishikawa S,
Nori F,
Ohara O,
Okazaki Y,
Orlando V,
Pang KC,
Pavan WJ,
Pavesi G,
Pesole G,
Petrovsky N,
Piazza S,
Reed J,
Reid JF,
Ring BZ,
Ringwald M,
Rost B,
Ruan Y,
Salzberg SL,
Sandelin A,
Schneider C,
Schönbach C,
Sekiguchi K,
Semple CA,
Seno S,
Sessa L,
Sheng Y,
Shibata Y,
Shimada H,
Shimada K,
Silva D,
Sinclair B,
Sperling S,
Stupka E,
Sugiura K,
Sultana R,
Takenaka Y,
Taki K,
Tammoja K,
Tan SL,
Tang S,
Taylor MS,
Tegner J,
Teichmann SA,
Ueda HR,
van Nimwegene E,
Verardo R,
Wei CL,
Yagi K,
Yamanishi H,
Zabarovsky E,
Zhu S,
Zimmer A,
Hide W,
Bult C,
Grimmond SM,
Teasdale RD,
Liu ET,
Brusic V,
Quackenbush J,
Wahlestedt C,
Mattick JS,
Hume DA,
Kai C,
Sasaki D,
Tomaru Y,
Fukuda S,
Kanamori-Katayama M,
Suzuki M,
Aoki J,
Arakawa T,
Iida J,
Imamura K,
Itoh M,
Kato T,
Kawaji H,
Kawagashira N,
Kawashima T,
Kojima M,
Kondo S,
Konno H,
Nakano K,
Ninomiya N,
Nishio T,
Okada M,
Plessy C,
Shibata K,
Shiraki T,
Suzuki S,
Tagami M,
Waki K,
Watahiki A,
Okamura-Oho Y,
Suzuki H,
Kawai J,
Hayashizaki Y

Science
  309 (5740): 1559-1563; 2005  
[Abstract]
[Full Text]

Identification, cDNA cloning, and targeted deletion of p70, a novel, ubiquitously expressed SH3 domain-containing protein
Carpino N,
Kobayashi R,
Zang H,
Takahashi Y,
Jou ST,
Feng J,
Nakajima H,
Ihle JN

Molecular and Cellular Biology
  22 (21): 7491-7500; Nov 2002  
[Full Text]

Subunit-specific rules governing AMPA receptor trafficking to synapses in hippocampal pyramidal neurons
Shi SH,
Hayashi Y,
Esteban JA,
Malinow R

Cell
  105 (3): 331-343; May 2001  
[Abstract]
[DOI] [Full Text] [PDF]

Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis
Wines ME,
Lee L,
Katari MS,
Zhang LQ,
DeRossi C,
Shi Y,
Perkins S,
Feldman M,
McCombie WR,
Holdener BC

Genomics
  72 (1): 88-98; Feb 2001  
[Abstract]
[Full Text]

Postnatal synaptic potentiation: Delivery of GluR4-containing AMPA receptors by spontaneous activity
Zhu JJ,
Esteban JA,
Hayashi Y,
Malinow R

Nature Neuroscience
  3 (11): 1098-1106; Nov 2000  
[Abstract]
[DOI] [Full Text] [PDF]

Odor maps in the mammalian olfactory bulb: domain organization and odorant structural features
Uchida N,
Takahashi YK,
Tanifuji M,
Mori K

Nature Neuroscience
  3 (10): 1035-1043; Oct 2000  
[Abstract]
[DOI] [Full Text] [PDF]

LTP mechanisms: from silence to four-lane traffic
Malinow R,
Mainen ZF,
Hayashi Y

Current Opinion in Neurobiology
  10 (3): 352-357; Jun 2000  
[Abstract]
[DOI] [Full Text] [PDF]

Driving AMPA receptors into synapses by LTP and CaMKII: Requirement for GluR1 and PDZ domain interaction
Hayashi Y,
Shi SH,
Esteban JA,
Piccini A,
Poncer JC,
Malinow R

Science
  287 (5461): 2262-2267; Mar 2000  
[Abstract]
[DOI] [Full Text] [PDF]

Distinct sites of opiate reward and aversion within the midbrain identified using a herpes simplex virus vector expressing GluR1
Carlezon WA,
Haile CN,
Coopersmith R,
Hayashi Y,
Malinow R,
Neve RL,
Nestler EJ

Journal of Neuroscience
  20 (5): art. no.-RC62; Mar 2000  
[Abstract]
[Full Text] [PDF]

Rapid spine delivery and redistribution of AMPA receptors after synaptic NMDA receptor activation
Shi SH,
Hayashi Y,
Petralia RS,
Zaman SH,
Wenthold RJ,
Svoboda K,
Malinow R

Science
  284 (5421): 1811-6; Jun 11 1999  
[Abstract]
[DOI] [Full Text] [PDF]

Two-photon imaging in living brain slices
Mainen ZF,
Maletic-Savatic M,
Shi SH,
Hayashi Y,
Malinow R,
Svoboda K

Methods
  18 (2): 231-9, 181; Jun 1999  
[Abstract]
[DOI] [Full Text] [PDF]

[Metabotropic glutamate receptor: its ligands and function in the olfactory system]
Hayashi Y

Nippon Yakurigaku Zasshi
  113 (2): 73-83; Feb 1999  
[Abstract]
[Full Text]

Introduction of green fluorescent protein into hippocampal neurons through viral infection
Malinow R,
Hayashi Y,
Maletic-Savatic M,
Zaman SH,
Poncer J,
Shi SH,
Esteban JA
In:
Imaging neurons : a laboratory manual
(eds. Yuste, Rafael Lanni, Frederick Konnerth, Arthur ) Cold Spring Harbor, NY: Cold Spring Harbor L 1999. :   



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