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A Users Guide to the Encyclopedia of DNA Elements (ENCODE)
Myers RM,
Stamatoyannopoulos J,
Snyder M,
Dunham I,
Hardison RC,
Bernstein BE,
Gingeras TR,
Kent WJ,
Birney E,
Wold B,
Crawford GE,
Epstein CB,
Shoresh N,
Ernst J,
Mikkelsen TS,
Kheradpour P,
Zhang XL,
Wang L,
Issner R,
Coyne MJ,
Durham T,
Ku MC,
Truong T,
Ward LD,
Altshuler RC,
Lin MF,
Kellis M,
Davis CA,
Kapranov P,
Dobin A,
Zaleski C,
Schlesinger F,
Batut P,
Chakrabortty S,
Jha S,
Lin W,
Drenkow J,
Wang HE,
Bell KG,
Gao H,
Bell I,
Dumais E,
Dumais J,
Antonarakis SE,
Ucla C,
Borel C,
Guigo R,
Djebali S,
Lagarde J,
Kingswood C,
Ribeca P,
Sammeth M,
Alioto T,
Merkel A,
Tilgner H,
Carninci P,
Hayashizaki Y,
Lassmann T,
Takahashi H,
Abdelhamid RF,
Hannon G,
Fejes-Toth K,
Preall J,
Gordon A,
Sotirova V,
Reymond A,
Howald C,
Graison EA,
Chrast J,
Ruan YJ,
Ruan XA,
Shahab A,
Poh WT,
Wei CL,
Furey TS,
Boyle AP,
Sheffield NC,
Song LY,
Shibata Y,
Vales T,
Winter D,
Zhang ZC,
London D,
Wang TY,
Keefe D,
Iyer VR,
Lee BK,
McDaniell RM,
Liu Z,
Battenhouse A,
Bhinge AA,
Lieb JD,
Grasfeder LL,
Showers KA,
Giresi PG,
Kim SK,
Shestak C,
Pauli F,
Reddy TE,
Gertz J,
Partridge EC,
Jain P,
Sprouse RO,
Bansal A,
Pusey B,
Muratet MA,
Varley KE,
Bowling KM,
Newberry KM,
Nesmith AS,
Dilocker JA,
Parker SL,
Waite LL,
Thibeault K,
Roberts K,
Absher DM,
Mortazavi A,
Williams B,
Marinov G,
Trout D,
Pepke S,
King B,
McCue K,
Kirilusha A,
DeSalvo G,
Fisher-Aylor K,
Amrhein H,
Vielmetter J,
Sherlock G,
Sidow A,
Batzoglou S,
Rauch R,
Kundaje A,
Libbrecht M,
Margulies EH,
Parker SC,
Elnitski L,
Green ED,
Hubbard T,
Harrow J,
Searle S,
Kokocinski F,
Aken B,
Frankish A,
Hunt T,
Despacio-Reyes G,
Kay M,
Mukherjee G,
Bignell A,
Saunders G,
Boychenko V,
Brent M,
Van Baren MJ,
Brown RH,
Gerstein M,
Khurana E,
Balasubramanian S,
Zhang ZD,
Lam H,
Cayting P,
Robilotto R,
Lu Z,
Derrien T,
Tanzer A,
Knowles DG,
Mariotti M,
Haussler D,
Harte R,
Diekhans M,
Lin M,
Valencia A,
Tress M,
Rodriguez JM,
Landt SG,
Raha D,
Shi MY,
Euskirchen G,
Grubert F,
Kasowski M,
Lian J,
Lacroute P,
Xu YH,
Monahan H,
Patacsil D,
Slifer T,
Yang XQ,
Charos A,
Reed B,
Wu LF,
Auerbach RK,
Habegger L,
Hariharan M,
Rozowsky J,
Abyzov A,
Weissman SM,
Struhl K,
Lamarre-Vincent N,
Lindahl-Allen M,
Miotto B,
Moqtaderi Z,
Fleming JD,
Newburger P,
Farnham PJ,
Frietze S,
OGeen H,
Xu XQ,
Blahnik KR,
Cao AR,
Iyengar S,
Stamatoyannopoulos JA,
Kaul R,
Thurman RE,
Wang H,
Navas PA,
Sandstrom R,
Sabo PJ,
Weaver M,
Canfield T,
Lee K,
Neph S,
Roach V,
Reynolds A,
Johnson A,
Rynes E,
Giste E,
Vong S,
Neri J,
Frum T,
Johnson EM,
Nguyen ED,
Ebersol AK,
Sanchez ME,
Sheffer HH,
Lotakis D,
Haugen E,
Humbert R,
Kutyavin T,
Shafer T,
Dekker J,
Lajoie BR,
Sanyal A,
Rosenbloom KR,
Dreszer TR,
Raney BJ,
Barber GP,
Meyer LR,
Sloan CA,
Malladi VS,
Cline MS,
Learned K,
Swing VK,
Zweig AS,
Rhead B,
Fujita PA,
Roskin K,
Karolchik D,
Kuhn RM,
Wilder SP,
Sobral D,
Herrero J,
Beal K,
Lukk M,
Brazma A,
Vaquerizas JM,
Luscombe NM,
Bickel PJ,
Boley N,
Brown JB,
Li QH,
Huang HY,
Sboner A,
Yip KY,
Cheng C,
Yan KK,
Bhardwaj N,
Wang J,
Lochovsky L,
Jee J,
Gibson T,
Leng J,
Du J,
Harris RS,
Song G,
Miller W,
Suh B,
Wang T,
Paten B,
Noble WS,
Hoffman MM,
Buske OJ,
Weng ZP,
Dong XJ,
Xi HL,
Tenenbaum SA,
Doyle F,
Penalva LO,
Chittur S,
Tullius TD,
White KP,
Karmakar S,
Victorsen A,
Jameel N,
Bild N,
Grossman RL,
Whitfield TW,
Collins PJ,
Trinklein ND,
Giddings MC,
Chen X,
Khatun J,
Maier C,
Yu YB,
Gunawardena H,
Risk B,
Feingold EA,
Lowdon RF,
Dillon LA,
Good PJ,
Encode Project Conso

Plos Biology
  9 (4): Apr 2011   PMCID: PMC3079585
[Abstract]
[DOI] [Full Text]

Initial sequencing and comparative analysis of the mouse genome
Waterston RH,
Lindblad-Toh K,
Birney E,
Rogers J,
Abril JF,
Agarwal P,
Agarwala R,
Ainscough R,
Alexandersson M,
An P,
Antonarakis SE,
Attwood J,
Baertsch R,
Bailey J,
Barlow K,
Beck S,
Berry E,
Birren B,
Bloom T,
Bork P,
Botcherby M,
Bray N,
Brent MR,
Brown DG,
Brown SD,
Bult C,
Burton J,
Butler J,
Campbell RD,
Carninci P,
Cawley S,
Chiaromonte F,
Chinwalla AT,
Church DM,
Clamp M,
Clee C,
Collins FS,
Cook LL,
Copley RR,
Coulson A,
Couronne O,
Cuff J,
Curwen V,
Cutts T,
Daly M,
David R,
Davies J,
Delehaunty KD,
Deri J,
Dermitzakis ET,
Dewey C,
Dickens NJ,
Diekhans M,
Dodge S,
Dubchak I,
Dunn DM,
Eddy SR,
Elnitski L,
Emes RD,
Eswara P,
Eyras E,
Felsenfeld A,
Fewell GA,
Flicek P,
Foley K,
Frankel WN,
Fulton LA,
Fulton RS,
Furey TS,
Gage D,
Gibbs RA,
Glusman G,
Gnerre S,
Goldman N,
Goodstadt L,
Grafham D,
Graves TA,
Green ED,
Gregory S,
Guigo R,
Guyer M,
Hardison RC,
Haussler D,
Hayashizaki Y,
Hillier LW,
Hinrichs A,
Hlavina W,
Holzer T,
Hsu F,
Hua A,
Hubbard T,
Hunt A,
Jackson I,
Jaffe DB,
Johnson LS,
Jones M,
Jones TA,
Joy A,
Kamal M,
Karlsson EK,
Karolchik D,
Kasprzyk A,
Kawai J,
Keibler E,
Kells C,
Kent WJ,
Kirby A,
Kolbe DL,
Korf I,
Kucherlapati RS,
Kulbokas EJ,
Kulp D,
Landers T,
Leger JP,
Leonard S,
Letunic I,
Levine R,
Li J,
Li M,
Lloyd C,
Lucas S,
Ma B,
Maglott DR,
Mardis ER,
Matthews L,
Mauceli E,
Mayer JH,
McCarthy M,
McCombie WR,
McLaren S,
McLay K,
McPherson JD,
Meldrim J,
Meredith B,
Mesirov JP,
Miller W,
Miner TL,
Mongin E,
Montgomery KT,
Morgan M,
Mott R,
Mullikin JC,
Muzny DM,
Nash WE,
Nelson JO,
Nhan MN,
Nicol R,
Ning Z,
Nusbaum C,
OConnor MJ,
Okazaki Y,
Oliver K,
Larty EO,
Pachter L,
Parra G,
Pepin KH,
Peterson J,
Pevzner P,
Plumb R,
Pohl CS,
Poliakov A,
Ponce TC,
Ponting CP,
Potter S,
Quail M,
Reymond A,
Roe BA,
Roskin KM,
Rubin EM,
Rust AG,
Santos R,
Sapojnikov V,
Schultz B,
Schultz J,
Schwartz MS,
Schwartz S,
Scott C,
Seaman S,
Searle S,
Sharpe T,
Sheridan A,
Shownkeen R,
Sims S,
Singer JB,
Slater G,
Smit A,
Smith DR,
Spencer B,
Stabenau A,
Strange-Thomann NS,
Sugnet C,
Suyama M,
Tesler G,
Thompson J,
Torrents D,
Trevaskis E,
Tromp J,
Ucla C,
Vidal AU,
Vinson JP,
von Niederhausern AC,
Wade CM,
Wall M,
Weber RJ,
Weiss RB,
Wendl MC,
West AP,
Wetterstrand K,
Wheeler R,
Whelan S,
Wierzbowski J,
Willey D,
Williams S,
Wilson RK,
Winter E,
Worley KC,
Wyman D,
Yang S,
Yang SP,
Zdobnov EM,
Zody MC,
Lander ES

Nature
  420 (6915): 520-562; Dec 2002  
[Full Text]


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