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8 Article(s) on File
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A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
Dharmawardhana P,
Ren L,
Amarasinghe V,
Monaco M,
Thomason J,
Ravenscroft D,
McCouch S,
Ware D,
Jaiswal P

Rice
  6 (1): 1-15; May 29 2013   Elsevier
[Abstract]
[DOI] [Full Text]

Maize Metabolic Network Construction and Transcriptome Analysis
Monaco MK,
Sen TZ,
Dharmawardhana PD,
Ren L,
Schaeffer M,
Naithani S,
Amarasinghe V,
Thomason J,
Harper L,
Gardiner J,
Cannon EK,
Lawrence CJ,
Ware D,
Jaiswal P

Plant Genome
  6 (1): Mar 2013   Thomson-Reuters
[Abstract]
[DOI] [Full Text]

Gramene database in 2010: Updates and extensions
Youens-Clark K,
Buckler E,
Casstevens T,
Chen C,
DeClerck G,
Derwent P,
Dharmawardhana P,
Jaiswal P,
Kersey P,
Karthikeyan AS,
Lu J,
McCouch SR,
Ren L,
Spooner W,
Stein JC,
Thomason J,
Wei S,
Ware DH

Nucleic Acids Research
  39 (0): Jan 2011   PMCID: PMC3013721
[Abstract]
[DOI] [Full Text] [PDF]

The BioPAX community standard for pathway data sharing
Demir E,
Cary MP,
Paley S,
Fukuda K,
Lemer C,
Vastrik I,
Wu G,
DEustachio P,
Schaefer C,
Luciano J,
Schacherer F,
Martinez-Flores I,
Hu Z,
Jimenez-Jacinto V,
Joshi-Tope G,
Kandasamy K,
Lopez-Fuentes AC,
Mi H,
Pichler E,
Rodchenkov I,
Splendiani A,
Tkachev S,
Zucker J,
Gopinath G,
Rajasimha H,
Ramakrishnan R,
Shah I,
Syed M,
Anwar N,
Babur ,
Blinov M,
Brauner E,
Corwin D,
Donaldson S,
Gibbons F,
Goldberg R,
Hornbeck P,
Luna A,
Murray-Rust P,
Neumann E,
Reubenacker O,
Samwald M,
Van Iersel M,
Wimalaratne S,
Allen K,
Braun B,
Whirl-Carrillo M,
Cheung KH,
Dahlquist K,
Finney A,
Gillespie M,
Glass E,
Gong L,
Haw R,
Honig M,
Hubaut O,
Kane D,
Krupa S,
Kutmon M,
Leonard J,
Marks D,
Merberg D,
Petri V,
Pico A,
Ravenscroft D,
Ren L,
Shah N,
Sunshine M,
Tang R,
Whaley R,
Letovksy S,
Buetow KH,
Rzhetsky A,
Schachter V,
Sobral BS,
Dogrusoz U,
McWeeney S,
Aladjem M,
Birney E,
Collado-Vides J,
Goto S,
Hucka M,
Novère NL,
Maltsev N,
Pandey A,
Thomas P,
Wingender E,
Karp PD,
Sander C,
Bader GD

Nature Biotechnology
  28 (9): 935-942; 2010   PMCID: PMC3001121
[Abstract]
[DOI] [Full Text] [PDF]

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
Bernard D,
Prasanth KV,
Tripathi V,
Colasse S,
Nakamura T,
Xuan Z,
Zhang MQ,
Sedel F,
Jourdren L,
Coulpier F,
Triller A,
Spector DL,
Bessis A

EMBO Journal
  (0): 1-12; 2010   PMC2944070
[Abstract]
[DOI] [Full Text] [PDF]

The B73 Maize Genome: Complexity, Diversity, and Dynamics
Schnable PS,
Ware DH,
Fulton RS,
Stein JC,
Wei FS,
Pasternak S,
Liang CZ,
Zhang JW,
Fulton L,
Graves TA,
Minx P,
Reily AD,
Courtney L,
Kruchowski SS,
Tomlinson C,
Strong C,
Delehaunty K,
Fronick C,
Courtney B,
Rock SM,
Belter E,
Du FY,
Kim K,
Abbott RM,
Cotton M,
Levy A,
Marchetto P,
Ochoa K,
Jackson SM,
Gillam B,
Chen WZ,
Yan L,
Higginbotham J,
Cardenas M,
Waligorski J,
Applebaum E,
Phelps L,
Falcone J,
Kanchi K,
Thane T,
Scimone A,
Thane N,
Henke J,
Wang T,
Ruppert J,
Shah N,
Rotter K,
Hodges J,
Ingenthron E,
Cordes M,
Kohlberg S,
Sgro J,
Delgado B,
Mead K,
Chinwalla A,
Leonard S,
Crouse K,
Collura K,
Kudrna D,
Currie J,
He RF,
Angelova A,
Rajasekar S,
Mueller T,
Lomeli R,
Scara G,
Ko A,
Delaney K,
Wissotski M,
Lopez G,
Campos D,
Braidotti M,
Ashley E,
Golser W,
Kim H,
Lee S,
Lin JK,
Dujmic Z,
Kim W,
Talag J,
Zuccolo A,
Fan C,
Sebastian A,
Kramer MR,
Spiegel L,
Nascimento L,
Zutavern T,
Miller B,
Ambroise C,
Muller S,
Spooner W,
Narechania A,
Ren LY,
Wei S,
Kumari S,
Faga BP,
Levy MJ,
McMahan L,
Van Buren P,
Vaughn MW,
Ying K,
Yeh CT,
Emrich SJ,
Jia Y,
Kalyanaraman A,
Hsia AP,
Barbazuk WB,
Baucom RS,
Brutnell TP,
Carpita NC,
Chaparro C,
Chia JM,
Deragon JM,
Estill JC,
Fu Y,
Jeddeloh JA,
Han YJ,
Lee H,
Li PH,
Lisch DR,
Liu SZ,
Liu ZJ,
Nagel DH,
McCann MC,
SanMiguel P,
Myers AM,
Nettleton D,
Nguyen J,
Penning BW,
Ponnala L,
Schneider KL,
Schwartz DC,
Sharma A,
Soderlund C,
Springer NM,
Sun Q,
Wang H,
Waterman M,
Westerman R,
Wolfgruber TK,
Yang LX,
Yu Y,
Zhang LF,
Zhou SG,
Zhu Q,
Bennetzen JL,
Dawe RK,
Jiang JM,
Jiang N,
Presting GG,
Wessler SR,
Aluru S,
Martienssen RA,
Clifton SW,
McCombie WR,
Wing RA,
Wilson RK

Science
  326 (5956): 1112-1115; Nov 20 2009  
[Abstract]
[DOI] [Full Text] [PDF]

Gramene QTL database: development, content and applications
Ni J,
Pujar A,
Youens-Clark K,
Yap IV,
Jaiswal P,
Tecle I,
Tung C,
Ren L,
Spooner W,
Wei X,
Avraham S,
Ware DH,
Stein LD,
McCouch S

Database
  2009 (0): bap005; May 12 2009   PMC2790302
[Abstract]
[DOI] [Full Text] [PDF]

Gramene: a growing plant comparative genomics resource
Liang C,
Jaiswal P,
Hebbard C,
Avraham S,
Buckler ES,
Casstevens T,
Hurwitz BL,
McCouch S,
Ni J,
Pujar A,
Ravenscroft D,
Ren L,
Spooner W,
Tecle I,
Thomason J,
Tung CW,
Wei X,
Yap I,
Youens-Clark K,
Ware DH,
Stein LD

Nucleic Acids Res
  36 (0): D947-53; Jan 2008   PMCID: PMC2238951
[Abstract]
[DOI] [Full Text] [PDF]


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