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An integrated encyclopedia of DNA elements in the human genome
Dunham I,
Kundaje A,
Aldred SF,
Collins PJ,
Davis C,
Doyle F,
Epstein CB,
Frietze S,
Harrow J,
Kaul R,
Khatun J,
Lajoie BR,
Landt SG,
Lee BK,
Pauli F,
Rosenbloom KR,
Sabo P,
Safi A,
Sanyal A,
Shoresh N,
Simon JM,
Song L,
Trinklein ND,
Altshuler RC,
Birney E,
Brown JB,
Cheng C,
Djebali S,
Dong XJ,
Ernst J,
Furey TS,
Gerstein M,
Giardine B,
Greven M,
Hardison RC,
Harris RS,
Herrero J,
Hoffman MM,
Iyer S,
Kellis M,
Kheradpour P,
Lassmann T,
Li QH,
Lin X,
Marinov GK,
Merkel A,
Mortazavi A,
Parker SC,
Reddy TE,
Rozowsky J,
Schlesinger F,
Thurman RE,
Wang J,
Ward LD,
Whitfield TW,
Wilder SP,
Wu W,
Xi HL,
Yip KY,
Zhuang JL,
Bernstein BE,
Green ED,
Gunter C,
Snyder M,
Pazin MJ,
Lowdon RF,
Dillon LA,
Adams LB,
Kelly CJ,
Zhang J,
Wexler JR,
Good PJ,
Feingold EA,
Crawford GE,
Dekker J,
Elnitski L,
Farnham PJ,
Giddings MC,
Gingeras TR,
Guigo R,
Hubbard TJ,
Kent WJ,
Lieb JD,
Margulies EH,
Myers RM,
Stamatoyannopoulos JA,
Tenenbaum SA,
Weng ZP,
White KP,
Wold B,
Yu Y,
Wrobel J,
Risk BA,
Gunawardena HP,
Kuiper HC,
Maier CW,
Xie L,
Chen X,
Mikkelsen TS,
Gillespie S,
Goren A,
Ram O,
Zhang XL,
Wang L,
Issner R,
Coyne MJ,
Durham T,
Ku M,
Truong T,
Eaton ML,
Davis CA,
Dobin A,
Tanzer A,
Lagarde J,
Lin W,
Xue CH,
Williams BA,
Zaleski C,
Roeder M,
Kokocinski F,
Abdelhamid RF,
Alioto T,
Antoshechkin I,
Baer MT,
Batut P,
Bell I,
Bell K,
Chakrabortty S,
Chrast J,
Curado J,
Derrien T,
Drenkow J,
Dumais E,
Dumais J,
Duttagupta R,
Fastuca M,
Fejes-Toth K,
Ferreira P,
Foissac S,
Fullwood MJ,
Gao H,
Gonzalez D,
Gordon A,
Howald C,
Jha S,
Johnson R,
Kapranov P,
King B,
Kingswood C,
Li GL,
Luo OJ,
Park E,
Preall JB,
Presaud K,
Ribeca P,
Robyr D,
Ruan XA,
Sammeth M,
Sandhu KS,
Schaeffer L,
See LH,
Shahab A,
Skancke J,
Suzuki AM,
Takahashi H,
Tilgner H,
Trout D,
Walters N,
Wang HE,
Yu YB,
Hayashizaki Y,
Reymond A,
Antonarakis SE,
Hannon GJ,
Ruan YJ,
Carninci P,
Sloan CA,
Learned K,
Malladi VS,
Wong MC,
Barber G,
Cline MS,
Dreszer TR,
Heitner SG,
Karolchik D,
Kirkup VM,
Meyer LR,
Long JC,
Maddren M,
Raney BJ,
Song LY,
Grasfeder LL,
Giresi PG,
Battenhouse A,
Sheffield NC,
Showers KA,
London D,
Bhinge AA,
Shestak C,
Schaner MR,
Kim SK,
Zhang ZZ,
Mieczkowski PA,
Mieczkowska JO,
Liu Z,
McDaniell RM,
Ni YY,
Rashid NU,
Kim MJ,
Adar S,
Zhang ZC,
Wang TY,
Winter D,
Keefe D,
Iyer VR,
Zheng MZ,
Wang P,
Gertz J,
Vielmetter J,
Partridge EC,
Varley KE,
Gasper C,
Bansal A,
Pepke S,
Jain P,
Amrhein H,
Bowling KM,
Anaya M,
Cross MK,
Muratet MA,
Newberry KM,
McCue K,
Nesmith AS,
Fisher-Aylor KI,
Pusey B,
DeSalvo G,
Parker SL,
Balasubramanian S,
Davis NS,
Meadows SK,
Eggleston T,
Newberry JS,
Levy SE,
Absher DM,
Wong WH,
Blow MJ,
Visel A,
Pennachio LA,
Petrykowska HM,
Abyzov A,
Aken B,
Barrell D,
Barson G,
Berry A,
Bignell A,
Boychenko V,
Bussotti G,
Davidson C,
Despacio-Reyes G,
Diekhans M,
Ezkurdia I,
Frankish A,
Gilbert J,
Gonzalez JM,
Griffiths E,
Harte R,
Hendrix DA,
Hunt T,
Jungreis I,
Kay M,
Khurana E,
Leng J,
Lin MF,
Loveland J,
Lu Z,
Manthravadi D,
Mariotti M,
Mudge J,
Mukherjee G,
Notredame C,
Pei BK,
Rodriguez JM,
Saunders G,
Sboner A,
Searle S,
Sisu C,
Snow C,
Steward C,
Tapanari E,
Tress ML,
van Baren MJ,
Washietl S,
Wilming L,
Zadissa A,
Zhang ZD,
Brent M,
Haussler D,
Valencia A,
Addleman N,
Alexander RP,
Auerbach RK,
Bettinger K,
Bhardwaj N,
Boyle AP,
Cao AR,
Cayting P,
Charos A,
Cheng Y,
Eastman C,
Euskirchen G,
Fleming JD,
Grubert F,
Habegger L,
Hariharan M,
Harmanci A,
Iyengar S,
Jin VX,
Karczewski KJ,
Kasowski M,
Lacroute P,
Lam H,
Lamarre-Vincent N,
Lian J,
Lindahl-Allen M,
Min RQ,
Miotto B,
Monahan H,
Moqtaderi Z,
Mu XM,
OGeen H,
Ouyang ZQ,
Patacsil D,
Raha D,
Ramirez L,
Reed B,
Shi MY,
Slifer T,
Witt H,
Wu LF,
Xu XQ,
Yan KK,
Yang XQ,
Struhl K,
Weissman SM,
Penalva LO,
Karmakar S,
Bhanvadia RR,
Choudhury A,
Domanus M,
Ma LJ,
Moran J,
Victorsen A,
Auer T,
Centanin L,
Eichenlaub M,
Gruhl F,
Heermann S,
Hoeckendorf B,
Inoue D,
Kellner T,
Kirchmaier S,
Mueller C,
Reinhardt R,
Schertel L,
Schneider S,
Sinn R,
Wittbrodt B,
Wittbrodt J,
Jain G,
Balasundaram G,
Bates DL,
Byron R,
Canfield TK,
Diegel MJ,
Dunn D,
Ebersol AK,
Frum T,
Garg K,
Gist E,
Hansen RS,
Boatman L,
Haugen E,
Humbert R,
Johnson AK,
Johnson EM,
Kutyavin TV,
Lee K,
Lotakis D,
Maurano MT,
Neph SJ,
Neri FV,
Nguyen ED,
Qu HZ,
Reynolds AP,
Roach V,
Rynes E,
Sanchez ME,
Sandstrom RS,
Shafer AO,
Stergachis AB,
Thomas S,
Vernot B,
Vierstra J,
Vong S,
Wang H,
Weaver MA,
Yan YQ,
Zhang MH,
Akey JM,
Bender M,
Dorschner MO,
Groudine M,
MacCoss MJ,
Navas P,
Stamatoyannopoulos G,
Beal K,
Brazma A,
Flicek P,
Johnson N,
Lukk M,
Luscombe NM,
Sobral D,
Vaquerizas JM,
Batzoglou S,
Sidow A,
Hussami N,
Kyriazopoulou-Panagi S,
Libbrecht MW,
Schaub MA,
Miller W,
Bickel PJ,
Banfai B,
Boley NP,
Huang HY,
Li JJ,
Noble WS,
Bilmes JA,
Buske OJ,
Sahu AD,
Kharchenko PV,
Park PJ,
Baker D,
Taylor J,
Lin XY,
Lochovsky L,
Min R,
Encode Project Conso

Nature
  489 (7414): 57-74; Sep 6 2012  
[Abstract]
[DOI] [Full Text]

Genome analysis of the platypus reveals unique signatures of evolution
Warren WC,
Hillier LW,
Marshall Graves JA,
Birney E,
Ponting CP,
Grutzner F,
Belov K,
Miller W,
Clarke L,
Chinwalla AT,
Yang SP,
Heger A,
Locke DP,
Miethke P,
Waters PD,
Veyrunes F,
Fulton L,
Fulton B,
Graves T,
Wallis J,
Puente XS,
Lopez-Otin C,
Ordonez GR,
Eichler EE,
Chen L,
Cheng Z,
Deakin JE,
Alsop A,
Thompson K,
Kirby P,
Papenfuss AT,
Wakefield MJ,
Olender T,
Lancet D,
Huttley GA,
Smit AF,
Pask A,
Temple-Smith P,
Batzer MA,
Walker JA,
Konkel MK,
Harris RS,
Whittington CM,
Wong ES,
Gemmell NJ,
Buschiazzo E,
Vargas Jentzsch IM,
Merkel A,
Schmitz J,
Zemann A,
Churakov G,
Kriegs JO,
Brosius J,
Murchison EP,
Sachidanandam R,
Smith C,
Hannon GJ,
Tsend-Ayush E,
McMillan D,
Attenborough R,
Rens W,
Ferguson-Smith M,
Lefevre CM,
Sharp JA,
Nicholas KR,
Ray DA,
Kube M,
Reinhardt R,
Pringle TH,
Taylor J,
Jones RC,
Nixon B,
Dacheux JL,
Niwa H,
Sekita Y,
Huang X,
Stark A,
Kheradpour P,
Kellis M,
Flicek P,
Chen Y,
Webber C,
Hardison R,
Nelson J,
Hallsworth-Pepin K,
Delehaunty K,
Markovic C,
Minx P,
Feng Y,
Kremitzki C,
Mitreva M,
Glasscock J,
Wylie T,
Wohldmann P,
Thiru P,
Nhan MN,
Pohl CS,
Smith SM,
Hou S,
Renfree MB,
Mardis ER,
Wilson RK

Nature
  453 (7192): 175-83; May 8 2008   PMC2803040
[Abstract]
[DOI] [Full Text] [PDF]

The genome sequence of Schizosaccharomyces pombe
Wood V,
Gwilliam R,
Rajandream MA,
Lyne M,
Lyne R,
Stewart A,
Sgouros J,
Peat N,
Hayles J,
Baker S,
Basham D,
Bowman S,
Brooks K,
Brown D,
Brown S,
Chillingworth T,
Churcher C,
Collins M,
Connor R,
Cronin A,
Davis P,
Feltwell T,
Fraser A,
Gentles S,
Goble A,
Hamlin N,
Harris D,
Hidalgo J,
Hodgson G,
Holroyd S,
Hornsby T,
Howarth S,
Huckle EJ,
Hunt S,
Jagels K,
James K,
Jones L,
Jones M,
Leather S,
McDonald S,
McLean J,
Mooney P,
Moule S,
Mungall K,
Murphy L,
Niblett D,
Odell C,
Oliver K,
ONeil S,
Pearson D,
Quail MA,
Rabbinowitsch E,
Rutherford K,
Rutter S,
Saunders D,
Seeger K,
Sharp S,
Skelton J,
Simmonds M,
Squares R,
Squares S,
Stevens K,
Taylor K,
Taylor RG,
Tivey A,
Walsh S,
Warren T,
Whitehead S,
Woodward J,
Volckaert G,
Aert R,
Robben J,
Grymonprez B,
Weltjens I,
Vanstreels E,
Rieger M,
Schafer M,
Muller-Auer S,
Gabel C,
Fuchs M,
Fritzc C,
Holzer E,
Moestl D,
Hilbert H,
Borzym K,
Langer I,
Beck A,
Lehrach H,
Reinhardt R,
Pohl TM,
Eger P,
Zimmermann W,
Wedler H,
Wambutt R,
Purnelle B,
Goffeau A,
Cadieu E,
Dreano S,
Gloux S,
Lelaure V,
Mottier S,
Galibert F,
Aves SJ,
Xiang Z,
Hunt C,
Moore K,
Hurst SM,
Lucas M,
Rochet M,
Gaillardin C,
Tallada VA,
Garzon A,
Thode G,
Daga RR,
Cruzado L,
Jimenez J,
Sanchez M,
del Rey F,
Benito J,
Dominguez A,
Revuelta JL,
Moreno S,
Armstrong J,
Forsburg SL,
Cerrutti L,
Lowe T,
McCombie WR,
Paulsen I,
Potashkin J,
Shpakovski GV,
Ussery D,
Barrell BG,
Nurse P

Nature
  415 (6874): 871-880; Feb 2002  
[Full Text]

Initial sequencing and analysis of the human genome
Lander ES,
Linton LM,
Birren B,
Nusbaum C,
Zody MC,
Baldwin J,
Devon K,
Dewar K,
Doyle M,
FitzHugh W,
Funke R,
Gage D,
Harris K,
Heaford A,
Howland J,
Kann L,
Lehoczky J,
LeVine R,
McEwan P,
McKernan K,
Meldrim J,
Mesirov JP,
Miranda C,
Morris W,
Naylor J,
Raymond C,
Rosetti M,
Santos R,
Sheridan A,
Sougnez C,
Stange-Thomann N,
Stojanovic N,
Subramanian A,
Wyman D,
Rogers J,
Sulston J,
Ainscough R,
Beck S,
Bentley D,
Burton J,
Clee C,
Carter N,
Coulson A,
Deadman R,
Deloukas P,
Dunham A,
Dunham I,
Durbin R,
French L,
Grafham D,
Gregory S,
Hubbard T,
Humphray S,
Hunt A,
Jones M,
Lloyd C,
McMurray A,
Matthews L,
Mercer S,
Milne S,
Mullikin JC,
Mungall A,
Plumb R,
Ross M,
Shownkeen R,
Sims S,
Waterston RH,
Wilson RK,
Hillier LW,
McPherson JD,
Marra MA,
Mardis ER,
Fulton LA,
Chinwalla AT,
Pepin KH,
Gish WR,
Chissoe SL,
Wendl MC,
Delehaunty KD,
Miner TL,
Delehaunty A,
Kramer JB,
Cook LL,
Fulton RS,
Johnson DL,
Minx PJ,
Clifton SW,
Hawkins T,
Branscomb E,
Predki P,
Richardson P,
Wenning S,
Slezak T,
Doggett N,
Cheng JF,
Olsen A,
Lucas S,
Elkin C,
Uberbacher E,
Frazier M,
Gibbs RA,
Muzny DM,
Scherer SE,
Bouck JB,
Sodergren EJ,
Worley KC,
Rives CM,
Gorrell JH,
Metzker ML,
Naylor SL,
Kucherlapati RS,
Nelson DL,
Weinstock GM,
Sakaki Y,
Fujiyama A,
Hattori M,
Yada T,
Toyoda A,
Itoh T,
Kawagoe C,
Watanabe H,
Totoki Y,
Taylor T,
Weissenbach J,
Heilig R,
Saurin W,
Artiguenave F,
Brottier P,
Bruls T,
Pelletier E,
Robert C,
Wincker P,
Rosenthal A,
Platzer M,
Nyakatura G,
Taudien S,
Rump A,
Yang HM,
Yu J,
Wang J,
Huang GY,
Gu J,
Hood L,
Rowen L,
Madan A,
Qin SZ,
Davis RW,
Federspiel NA,
Abola AP,
Proctor MJ,
Myers RM,
Schmutz J,
Dickson M,
Grimwood J,
Cox DR,
Olson MV,
Kaul R,
Shimizu N,
Kawasaki K,
Minoshima S,
Evans GA,
Athanasiou M,
Schultz R,
Roe BA,
Chen F,
Pan HQ,
Ramser J,
Lehrach H,
Reinhardt R,
McCombie WR,
de la Bastide M,
Dedhia N,
Blocker H,
Hornischer K,
Nordsiek G,
Agarwala R,
Aravind L,
Bailey JA,
Bateman A,
Batzoglou S,
Birney E,
Bork P,
Brown DG,
Burge CB,
Cerutti L,
Chen HC,
Church D,
Clamp M,
Copley RR,
Doerks T,
Eddy SR,
Eichler EE,
Furey TS,
Galagan J,
Gilbert JG,
Harmon C,
Hayashizaki Y,
Haussler D,
Hermjakob H,
Hokamp K,
Jang WH,
Johnson LS,
Jones TA,
Kasif S,
Kaspryzk A,
Kennedy S,
Kent WJ,
Kitts P,
Koonin EV,
Korf I,
Kulp D,
Lancet D,
Lowe TM,
McLysaght A,
Mikkelsen T,
Moran JV,
Mulder N,
Pollara VJ,
Ponting CP,
Schuler G,
Schultz JR,
Slater G,
Smit AF,
Stupka E,
Szustakowki J,
Thierry-Mieg D,
Thierry-Mieg J,
Wagner L,
Wallis J,
Wheeler R,
Williams A,
Wolf YI,
Wolfe KH,
Yang SP,
Yeh RF,
Collins F,
Guyer MS,
Peterson J,
Felsenfeld A,
Wetterstrand KA,
Patrinos A

Nature
  409 (6822): 860-921; Feb 2001  
[Abstract]
[Full Text]


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