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4 Article(s) on File
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Hawkeye and AMOS: Visualizing and assessing the quality of genome assemblies
Schatz MC,
Phillippy AM,
Sommer DD,
Delcher AL,
Puiu D,
Narzisi G,
Salzberg SL,
Pop M

Briefings in Bioinformatics
  14 (2): 213-224; Mar 2013  
[DOI] [Full Text]

GAGE: A critical evaluation of genome assemblies and assembly algorithms
Salzberg SL,
Phillippy AM,
Zimin A,
Puiu D,
Magoc T,
Koren S,
Treangen TJ,
Schatz MC,
Delcher AL,
Roberts M,
Marcais G,
Pop M,
Yorke JA

Genome Res
  22 (3): 557-67; Mar 2012   NLM
[Abstract]
[DOI] [Full Text]

Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp
Bogdanove AJ,
Koebnik R,
Lu H,
Furutani A,
Angiuoli SV,
Patil PB,
Van Sluys MA,
Ryan RP,
Meyer DF,
Han SW,
Aparna G,
Rajaram M,
Delcher AL,
Phillippy AM,
Puiu D,
Schatz MC,
Shumway M,
Sommer DD,
Trapnell C,
Benahmed F,
Dimitrov G,
Madupu R,
Radune D,
Sullivan S,
Jha G,
Ishihara H,
Lee SW,
Pandey A,
Sharma V,
Sriariyanun M,
Szurek B,
Vera-Cruz CM,
Dorman KS,
Ronald PC,
Verdier V,
Dow JM,
Sonti RV,
Tsuge S,
Brendel VP,
Rabinowicz PD,
Leach JE,
White FF,
Salzberg SL

Journal of Bacteriology
  193 (19): 5450-5464; Oct 2011   PMC3187462
[Abstract]
[DOI]

Multi-platform next-generation sequencing of the domestic Turkey (Meleagris gallopavo): Genome assembly and analysis
Dalloul RA,
Long JA,
Zimin AV,
Aslam L,
Beal K,
Blomberg LA,
Bouffard P,
Burt DW,
Crasta O,
Crooijmans RP,
Cooper K,
Coulombe RA,
De S,
Delany ME,
Dodgson JB,
Dong JJ,
Evans C,
Frederickson KM,
Flicek P,
Florea L,
Folkerts O,
Groenen MA,
Harkins TT,
Herrero J,
Hoffmann S,
Megens HJ,
Jiang A,
de Jong P,
Kaiser P,
Kim H,
Kim KW,
Kim S,
Langenberger D,
Lee MK,
Lee T,
Mane S,
Marcais G,
Marz M,
McElroy AP,
Modise T,
Nefedov M,
Notredame C,
Paton IR,
Payne WS,
Pertea G,
Prickett D,
Puiu D,
Qioa D,
Raineri E,
Ruffier M,
Salzberg SL,
Schatz MC,
Scheuring C,
Schmidt CJ,
Schroeder S,
Searle SM,
Smith EJ,
Smith J,
Sonstegard TS,
Stadler PF,
Tafer H,
Tu Z,
van Tassell CP,
Vilella AJ,
Williams KP,
Yorke JA,
Zhang L,
Zhang HB,
Zhang X,
Zhang Y,
Reed KM

Plos Biology
  8 (9): 2010  
[Abstract]
[DOI] [Full Text]


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