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7 Article(s) on File
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Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
Delaneau O,
Marchini J,
McVeanh GA,
Donnelly P,
Lunter G,
Marchini JL,
Myers S,
Gupta-Hinch A,
Iqbal Z,
Mathieson I,
Rimmer A,
Xifara DK,
Kerasidou A,
Churchhouse C,
Altshuler DM,
Gabriel SB,
Lander ES,
Gupta N,
Daly MJ,
DePristo MA,
Banks E,
Bhatia G,
Carneiro MO,
Del Angel G,
Genovese G,
Handsaker RE,
Hartl C,
McCarroll SA,
Nemesh JC,
Poplin RE,
Schaffner SF,
Shakir K,
Sabeti PC,
Grossman SR,
Tabrizi S,
Tariyal R,
Li H,
Reich D,
Durbin RM,
Hurles ME,
Balasubramaniam S,
Burton J,
Danecek P,
Keane TM,
Kolb-Kokocinski A,
McCarthy S,
Stalker J,
Quail M,
Ayub Q,
Chen Y,
Coffey AJ,
Colonna V,
Huang N,
Jostins L,
Scally A,
Walter K,
Xue Y,
Zhang Y,
Blackburne B,
Lindsay SJ,
Ning Z,
Frankish A,
Harrow J,
Chris TS,
Abecasis GR,
Kang HM,
Anderson P,
Blackwell T,
Busonero F,
Fuchsberger C,
Jun G,
Maschio A,
Porcu E,
Sidore C,
Tan A,
Trost MK,
Bentley DR,
Grocock R,
Humphray S,
James T,
Kingsbury Z,
Bauer M,
Cheetham RK,
Cox T,
Eberle M,
Murray L,
Shaw R,
Chakravarti A,
Clark AG,
Keinan A,
Rodriguez-Flores JL,
De LaVega FM,
Degenhardt J,
Eichler EE,
Flicek P,
Clarke L,
Leinonen R,
Smith RE,
Zheng-Bradley X,
Beal K,
Cunningham F,
Herrero J,
McLaren WM,
Ritchie GR,
Barker J,
Kelman G,
Kulesha E,
Radhakrishnan R,
Roa A,
Smirnov D,
Streeter I,
Toneva I,
Gibbs RA,
Dinh H,
Kovar C,
Lee S,
Lewis L,
Muzny D,
Reid J,
Wang M,
Yu F,
Bainbridge M,
Challis D,
Evani US,
Lu J,
Nagaswamy U,
Sabo A,
Wang Y,
Yu J,
Fowler G,
Hale W,
Kalra D,
Green ED,
Knoppers BM,
Korbel JO,
Rausch T,
Sttz AM,
Lee C,
Griffin L,
Hsieh CH,
Mills RE,
Von Grotthuss M,
Zhang C,
Shi X,
Lehrach H,
Sudbrak R,
Amstislavskiy VS,
Lienhard M,
Mertes F,
Sultan M,
Timmermann B,
Yaspo ML,
Herwig SR,
Mardis ER,
Wilson RK,
Fulton L,
Fulton R,
Weinstock GM,
Chinwalla A,
Ding L,
Dooling D,
Koboldt DC,
McLellan MD,
Wallis JW,
Wendl MC,
Zhang Q,
Marth GT,
Garrison EP,
Kural D,
Lee WP,
Leong WF,
Ward AN,
Wu J,
Zhang M,
Nickerson DA,
Alkan C,
Hormozdiari F,
Ko A,
Sudmant PH,
Schmidt JP,
Davies CJ,
Gollub J,
Webster T,
Wong B,
Zhan Y,
Sherry ST,
Xiao C,
Church D,
Ananiev V,
Belaia Z,
Beloslyudtsev D,
Bouk N,
Chen C,
Cohen R,
Cook C,
Garner J,
Hefferon T,
Kimelman M,
Liu C,
Lopez J,
Meric P,
Ostapchuk Y,
Phan L,
Ponomarov S,
Schneider V,
Shekhtman E,
Sirotkin K,
Slotta D,
Zhang H,
Wang J,
Fang X,
Guo X,
Jian M,
Jiang H,
Jin X,
Li G,
Li J,
Li Y,
Liu X,
Lu Y,
Ma X,
Tai S,
Tang M,
Wang B,
Wang G,
Wu H,
Wu R,
Yin Y,
Zhang W,
Zhao J,
Zhao M,
Zheng X,
Lachlan H,
Fang L,
Li Q,
Li Z,
Lin H,
Liu B,
Luo R,
Shao H,
Xie Y,
Ye C,
Yu C,
Zheng H,
Zhu H,
Cai H,
Cao H,
Su Y,
Tian Z,
Yang H,
Yang L,
Zhu J,
Cai Z,
Albrecht MW,
Borodina TA,
Auton A,
Yoon SC,
Lihm J,
Makarov V,
Jin H,
Kim W,
Kim KC,
Gottipati S,
Jones D,
Cooper DN,
Ball EV,
Stenson PD,
Barnes B,
Kahn S,
Ye K,
Batzer MA,
Konkel MK,
Walker JA,
MacArthur DG,
Lek M,
Shriver MD,
Bustamante CD,
Gravel S,
Kenny EE,
Kidd JM,
Lacroute P,
Maples BK,
Moreno-Estrada A,
Zakharia F,
Henn B,
Sandoval K,
Byrnes JK,
Halperin E,
Baran Y,
Craig DW,
Christoforides A,
Izatt T,
Kurdoglu AA,
Sinari SA,
Homer N,
Squire K,
Sebat J,
Bafna V,
Burchard EG,
Hernandez RD,
Gignoux CR,
Haussler D,
Katzman SJ,
Kent WJ,
Howie B,
Ruiz-Linares A,
Dermitzakis ET,
Lappalainen T,
Devine SE,
Maroo A,
Tallon LJ,
Rosenfeld JA,
Michelson LP,
Angius A,
Cucca F,
Sanna S,
Bigham A,
Jones C,
Reinier F,
Lyons R,
Schlessinger D,
Awadalla P,
Hodgkinson A,
Oleksyk TK,
Martinez-Cruzado JC,
Fu Y,
Xiong M,
Jorde L,
Witherspoon D,
Xing J,
Browning BL,
Hajirasouliha I,
Chen K,
Albers CA,
Gerstein MB,
Abyzov A,
Chen J,
Habegger L,
Harmanci AO,
Mu XJ,
Sisu C,
Balasubramanian S,
Jin M,
Khurana E,
Clarke D,
Michaelson JJ,
Osullivan C,
Barnes KC,
Gharani N,
Toji LH,
Gerry N,
Kaye JS,
Kent A,
Mathias R,
Ossorio PN,
Parker M,
Rotimi CN,
Royal CD,
Tishkoff S,
Via M,
Bodmer W,
Bedoya G,
Yang G,
You CJ,
Garcia-Montero A,
Orfao A,
Dutil J,
Brooks LD,
Felsenfeld AL

Nature Communications
  5 (0): Jun 13 2014   Elsevier
[Abstract]
[DOI] [Full Text]

An integrated map of genetic variation from 1,092 human genomes
Altshuler DM,
Durbin RM,
Abecasis GR,
Bentley DR,
Chakravarti A,
Clark AG,
Donnelly P,
Eichler EE,
Flicek P,
Gabriel SB,
Gibbs RA,
Green ED,
Hurles ME,
Knoppers BM,
Korbel JO,
Lander ES,
Lee C,
Lehrach H,
Mardis ER,
Marth GT,
McVean GA,
Nickerson DA,
Schmidt JP,
Sherry ST,
Wang J,
Wilson RK,
Dinh H,
Kovar C,
Lee S,
Lewis L,
Muzny D,
Reid J,
Wang M,
Fang XD,
Guo XS,
Jian M,
Jiang H,
Jin X,
Li GQ,
Li JX,
Li YR,
Li Z,
Liu X,
Lu Y,
Ma XD,
Su Z,
Tai SS,
Tang MF,
Wang B,
Wang GB,
Wu HL,
Wu RH,
Yin Y,
Zhang WW,
Zhao J,
Zhao MR,
Zheng XL,
Zhou Y,
Gupta N,
Clarke L,
Leinonen R,
Smith RE,
Zheng-Bradley X,
Grocock R,
Humphray S,
James T,
Kingsbury Z,
Sudbrak R,
Albrecht MW,
Amstislavskiy VS,
Borodina TA,
Lienhard M,
Mertes F,
Sultan M,
Timmermann B,
Yaspo ML,
Fulton L,
Fulton R,
Weinstock GM,
Balasubramaniam S,
Burton J,
Danecek P,
Keane TM,
Kolb-Kokocinski A,
McCarthy S,
Stalker J,
Quail M,
Davies CJ,
Gollub J,
Webster T,
Wong B,
Zhan YP,
Auton A,
Yu F,
Bainbridge M,
Challis D,
Evani US,
Lu J,
Nagaswamy U,
Sabo A,
Wang Y,
Yu J,
Coin LJ,
Fang L,
Li QB,
Li ZY,
Lin HX,
Liu BH,
Luo RB,
Qin N,
Shao HJ,
Wang BQ,
Xie YL,
Ye C,
Yu C,
Zhang F,
Zheng HC,
Zhu HM,
Garrison EP,
Kural D,
Lee WP,
Leong WF,
Ward AN,
Wu JT,
Zhang MY,
Griffin L,
Hsieh CH,
Mills RE,
Shi XH,
von Grotthuss M,
Zhang CS,
Daly MJ,
DePristo MA,
Banks E,
Bhatia G,
Carneiro MO,
del Angel G,
Genovese G,
Handsaker RE,
Hartl C,
McCarroll SA,
Nemesh JC,
Poplin RE,
Schaffner SF,
Shakir K,
Yoon SC,
Lihm J,
Makarov V,
Jin HJ,
Kim W,
Kim KC,
Rausch T,
Beal K,
Cunningham F,
Herrero J,
McLaren WM,
Ritchie GR,
Gottipati S,
Keinan A,
Rodriguez-Flores JL,
Sabeti PC,
Grossman SR,
Tabrizi S,
Tariyal R,
Cooper DN,
Ball EV,
Stenson PD,
Barnes B,
Bauer M,
Cheetham RK,
Cox T,
Eberle M,
Kahn S,
Murray L,
Peden J,
Shaw R,
Ye K,
Batzer MA,
Konkel MK,
Walker JA,
MacArthur DG,
Lek M,
Herwig R,
Shriver MD,
Bustamante CD,
Byrnes JK,
De la Vega FM,
Gravel S,
Kenny EE,
Kidd JM,
Lacroute P,
Maples BK,
Moreno-Estrada A,
Zakharia F,
Halperin E,
Baran Y,
Craig DW,
Christoforides A,
Homer N,
Izatt T,
Kurdoglu AA,
Sinari SA,
Squire K,
Xiao CL,
Sebat J,
Bafna V,
Burchard EG,
Hernandez RD,
Gignoux CR,
Haussler D,
Katzman SJ,
Kent WJ,
Howie B,
Ruiz-Linares A,
Dermitzakis ET,
Lappalainen T,
Devine SE,
Liu XY,
Maroo A,
Tallon LJ,
Rosenfeld JA,
Michelson LP,
Kang HM,
Anderson P,
Angius A,
Bigham A,
Blackwell T,
Busonero F,
Cucca F,
Fuchsberger C,
Jones C,
Jun G,
Li Y,
Lyons R,
Maschio A,
Porcu E,
Reinier F,
Sanna S,
Schlessinger D,
Sidore C,
Tan A,
Trost MK,
Awadalla P,
Hodgkinson A,
Lunter G,
Marchini JL,
Myers S,
Churchhouse C,
Delaneau O,
Gupta-Hinch A,
Iqbal Z,
Mathieson I,
Rimmer A,
Xifara DK,
Oleksyk TK,
Fu YX,
Liu XM,
Xiong MM,
Jorde L,
Witherspoon D,
Xing JC,
Browning BL,
Alkan C,
Hajirasouliha I,
Hormozdiari F,
Ko A,
Sudmant PH,
Chen K,
Chinwalla A,
Ding L,
Dooling D,
Koboldt DC,
McLellan MD,
Wallis JW,
Wendl MC,
Zhang QY,
Tyler-Smith C,
Albers CA,
Ayub Q,
Chen Y,
Coffey AJ,
Colonna V,
Huang N,
Jostins L,
Li H,
Scally A,
Walter K,
Xue YL,
Zhang YJ,
Gerstein MB,
Abyzov A,
Balasubramanian S,
Chen JM,
Clarke D,
Fu Y,
Habegger L,
Harmanci AO,
Jin MK,
Khurana E,
Mu XJ,
Sisu C,
Degenhardt J,
Stutz AM,
Church D,
Michaelson JJ,
Ben B,
Lindsay SJ,
Ning ZM,
Yu FL,
Frankish A,
Harrow J,
Fowler G,
Hale W,
Kalra D,
Guo X,
Li G,
Zheng X,
Barker J,
Kelman G,
Kulesha E,
Radhakrishnan R,
Roa A,
Smirnov D,
Streeter I,
Toneva I,
Vaughan B,
Ananiev V,
Belaia Z,
Beloslyudtsev D,
Bouk N,
Chen C,
Cohen R,
Cook C,
Garner J,
Hefferon T,
Kimelman M,
Liu C,
Lopez J,
Meric P,
OSullivan C,
Ostapchuk Y,
Phan L,
Ponomarov S,
Schneider V,
Shekhtman E,
Sirotkin K,
Slotta D,
Zhang H,
Barnes KC,
Beiswanger C,
Cai HY,
Cao HZ,
Gharani N,
Henn B,
Jones D,
Kaye JS,
Kent A,
Kerasidou A,
Mathias R,
Ossorio PN,
Parker M,
Reich D,
Rotimi CN,
Royal CD,
Sandoval K,
Su YY,
Tian ZM,
Tishkoff S,
Toji LH,
Via M,
Wang YH,
Yang HM,
Yang L,
Zhu JY,
Bodmer W,
Bedoya G,
Ming CZ,
Yang G,
You CJ,
Peltonen L,
Garcia-Montero A,
Orfao A,
Dutil J,
Martinez-Cruzado JC,
Brooks LD,
Felsenfeld AL,
McEwen JE,
Clemm NC,
Duncanson A,
Dunn M,
Guyer MS,
Peterson JL,
Genomes Project C

Nature
  491 (7422): 56-65; Nov 1 2012  
[Abstract]
[DOI] [Full Text]

The International HapMap Project
Gibbs RA,
Belmont JW,
Hardenbol P,
Willis TD,
Yu FL,
Yang HM,
Chang LY,
Huang W,
Liu B,
Shen Y,
Tam PK,
Tsui LC,
Waye MM,
Wong JT,
Zeng CQ,
Zhang QR,
Chee MS,
Galver LM,
Kruglyak S,
Murray SS,
Oliphant AR,
Montpetit A,
Hudson TJ,
Chagnon F,
Ferretti V,
Leboeuf M,
Phillips MS,
Verner A,
Kwok PY,
Duan SH,
Lind DL,
Miller RD,
Rice JP,
Saccone NL,
Taillon-Miller P,
Xiao M,
Nakamura Y,
Sekine A,
Sorimachi K,
Tanaka T,
Tanaka Y,
Tsunoda T,
Yoshino E,
Bentley DR,
Deloukas P,
Hunt S,
Powell D,
Altshuler D,
Gabriel SB,
Qiu RZ,
Ken A,
Dunston GM,
Kato K,
Niikawa N,
Knoppers BM,
Foster MW,
Clayton EW,
Wang VO,
Watkin J,
Sodergren E,
Weinstock GM,
Wilson RK,
Fulton LL,
Rogers J,
Birren BW,
Han H,
Wang HG,
Godbout M,
Wallenburg JC,
LArcheveque P,
Bellemare G,
Todani K,
Fujita T,
Tanaka S,
Holden AL,
Lai EH,
Collins FS,
Brooks LD,
McEwen JE,
Guyer MS,
Jordan E,
Peterson JL,
Spiegel J,
Sung LM,
Zacharia LF,
Kennedy K,
Dunn MG,
Seabrook R,
Shillito M,
Skene B,
Stewart JG,
Valle DL,
Jorde LB,
Chakravarti A,
Cho MK,
Duster T,
Jasperse M,
Licinio J,
Long JC,
Marshall PA,
Ossorio PN,
Rotimi CN,
Royal CD,
Spallone P,
Terry SF,
Lander ES,
Nickerson DA,
Abecasis GR,

Nature
  426 (6968): 789-796; Dec 2003  
[Abstract]
[DOI] [Full Text]

In-depth view of structure, activity, and evolution of rice chromosome 10
Yu YS,
Rambo T,
Currie J,
Saski C,
Kim HR,
Collura K,
Thompson S,
Simmons J,
Yang TJ,
Nah G,
Patel AJ,
Thurmond S,
Henry D,
Oates R,
Palmer M,
Pries G,
Gibson J,
Anderson H,
Paradkar M,
Crane L,
Dale J,
Carver MB,
Wood T,
Frisch D,
Engler F,
Soderlund C,
Palmer LE,
Tetylman L,
Nascimento L,
de la Bastide M,
Spiegel L,
Ware D,
OShaughnessy A,
Dike S,
Dedhia N,
Preston R,
Huang E,
Ferraro K,
Kuit K,
Miller B,
Zutavern T,
Katzenberger F,
Muller S,
Balija V,
Martienssen RA,
Stein L,
Minx P,
Johnson D,
Cordum H,
Mardis E,
Cheng ZK,
Jiang JM,
Wilson R,
McCombie WR,
Wing RA,
Yuan QP,
Shu OY,
Liu J,
Jones KM,
Gansberger K,
Moffat K,
Hill J,
Tsitrin T,
Overton L,
Bera J,
Kim M,
Jin SH,
Tallon L,
Ciecko A,
Pai G,
Van Aken S,
Utterback T,
Reidmuller S,
Bormann J,
Feldblyum T,
Hsiao J,
Zismann V,
Blunt S,
de Vazeilles A,
Shaffer T,
Koo H,
Suh B,
Yang Q,
Haas B,
Peterson J,
Pertea M,
Volfovsky N,
Wortman J,
White O,
Salzberg SL,
Fraser CM,
Buell CR,
Messing J,
Song RT,
Fuks G,
Llaca V,
Kovchak S,
Young S,
Bowers JE,
Paterson AH,
Johns MA,
Mao L,
Pan HQ,
Dean RA,
Rice Chromosome 10 S

Science
  300 (5625): 1566-1569; Jun 6 2003  
[Abstract]
[Full Text]

Initial sequencing and comparative analysis of the mouse genome
Waterston RH,
Lindblad-Toh K,
Birney E,
Rogers J,
Abril JF,
Agarwal P,
Agarwala R,
Ainscough R,
Alexandersson M,
An P,
Antonarakis SE,
Attwood J,
Baertsch R,
Bailey J,
Barlow K,
Beck S,
Berry E,
Birren B,
Bloom T,
Bork P,
Botcherby M,
Bray N,
Brent MR,
Brown DG,
Brown SD,
Bult C,
Burton J,
Butler J,
Campbell RD,
Carninci P,
Cawley S,
Chiaromonte F,
Chinwalla AT,
Church DM,
Clamp M,
Clee C,
Collins FS,
Cook LL,
Copley RR,
Coulson A,
Couronne O,
Cuff J,
Curwen V,
Cutts T,
Daly M,
David R,
Davies J,
Delehaunty KD,
Deri J,
Dermitzakis ET,
Dewey C,
Dickens NJ,
Diekhans M,
Dodge S,
Dubchak I,
Dunn DM,
Eddy SR,
Elnitski L,
Emes RD,
Eswara P,
Eyras E,
Felsenfeld A,
Fewell GA,
Flicek P,
Foley K,
Frankel WN,
Fulton LA,
Fulton RS,
Furey TS,
Gage D,
Gibbs RA,
Glusman G,
Gnerre S,
Goldman N,
Goodstadt L,
Grafham D,
Graves TA,
Green ED,
Gregory S,
Guigo R,
Guyer M,
Hardison RC,
Haussler D,
Hayashizaki Y,
Hillier LW,
Hinrichs A,
Hlavina W,
Holzer T,
Hsu F,
Hua A,
Hubbard T,
Hunt A,
Jackson I,
Jaffe DB,
Johnson LS,
Jones M,
Jones TA,
Joy A,
Kamal M,
Karlsson EK,
Karolchik D,
Kasprzyk A,
Kawai J,
Keibler E,
Kells C,
Kent WJ,
Kirby A,
Kolbe DL,
Korf I,
Kucherlapati RS,
Kulbokas EJ,
Kulp D,
Landers T,
Leger JP,
Leonard S,
Letunic I,
Levine R,
Li J,
Li M,
Lloyd C,
Lucas S,
Ma B,
Maglott DR,
Mardis ER,
Matthews L,
Mauceli E,
Mayer JH,
McCarthy M,
McCombie WR,
McLaren S,
McLay K,
McPherson JD,
Meldrim J,
Meredith B,
Mesirov JP,
Miller W,
Miner TL,
Mongin E,
Montgomery KT,
Morgan M,
Mott R,
Mullikin JC,
Muzny DM,
Nash WE,
Nelson JO,
Nhan MN,
Nicol R,
Ning Z,
Nusbaum C,
OConnor MJ,
Okazaki Y,
Oliver K,
Larty EO,
Pachter L,
Parra G,
Pepin KH,
Peterson J,
Pevzner P,
Plumb R,
Pohl CS,
Poliakov A,
Ponce TC,
Ponting CP,
Potter S,
Quail M,
Reymond A,
Roe BA,
Roskin KM,
Rubin EM,
Rust AG,
Santos R,
Sapojnikov V,
Schultz B,
Schultz J,
Schwartz MS,
Schwartz S,
Scott C,
Seaman S,
Searle S,
Sharpe T,
Sheridan A,
Shownkeen R,
Sims S,
Singer JB,
Slater G,
Smit A,
Smith DR,
Spencer B,
Stabenau A,
Strange-Thomann NS,
Sugnet C,
Suyama M,
Tesler G,
Thompson J,
Torrents D,
Trevaskis E,
Tromp J,
Ucla C,
Vidal AU,
Vinson JP,
von Niederhausern AC,
Wade CM,
Wall M,
Weber RJ,
Weiss RB,
Wendl MC,
West AP,
Wetterstrand K,
Wheeler R,
Whelan S,
Wierzbowski J,
Willey D,
Williams S,
Wilson RK,
Winter E,
Worley KC,
Wyman D,
Yang S,
Yang SP,
Zdobnov EM,
Zody MC,
Lander ES

Nature
  420 (6915): 520-562; Dec 2002  
[Full Text]

Initial sequencing and analysis of the human genome
Lander ES,
Linton LM,
Birren B,
Nusbaum C,
Zody MC,
Baldwin J,
Devon K,
Dewar K,
Doyle M,
FitzHugh W,
Funke R,
Gage D,
Harris K,
Heaford A,
Howland J,
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