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11 Article(s) on File
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De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability
McCarthy SE,
Gillis J,
Kramer M,
Lihm J,
Yoon S,
Berstein Y,
Mistry M,
Pavlidis P,
Solomon R,
Ghiban E,
Antoniou E,
Kelleher E,
OBrien C,
Donohoe G,
Gill M,
Morris DW,
McCombie WR,
Corvin A

Molecular Psychiatry
  19 (6): 652-658; Jun 2014   NLM
[Abstract]
[DOI] [Full Text]

Bias tradeoffs in the creation and analysis of protein-protein interaction networks
Gillis J,
Ballouz S,
Pavlidis P

Journal of Proteomics
  100 (0): 44-54; Apr 4 2014   Elsevier
[DOI] [Full Text]

Progress and challenges in the computational prediction of gene function using networks: 2012-2013 update
Pavlidis P,
Gillis J

F1000Res
  2 (0): 230; Oct 31 2013   Nlm
[Abstract]
[DOI] [Full Text]

Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls
Mistry M,
Gillis J,
Pavlidis P

Bmc Neuroscience
  14 (1): 105; Sep 26 2013   NLM
[Abstract]
[DOI] [Full Text]

Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)
Gillis J,
Pavlidis P

BMC Bioinformatics
  14 (0): S15; May 2013   Nlm
[Abstract]
[DOI] [Full Text]

Assessing identity, redundancy and confounds in Gene Ontology annotations over time
Gillis J,
Pavlidis P

Bioinformatics
  29 (4): 476-82; Feb 15 2013   NLM
[Abstract]
[DOI] [Full Text]

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data
Zoubarev A,
Hamer KM,
Keshav KD,
McCarthy EL,
Santos JR,
Van Rossum T,
McDonald C,
Hall A,
Wan X,
Lim R,
Gillis J,
Pavlidis P

Bioinformatics
  28 (17): 2272-2273; Sep 1 2012  
[Abstract]
[DOI] [Full Text]

Diverse epigenetic strategies interact to control epidermal differentiation
Mulder KW,
Wang X,
Escriu C,
Ito Y,
Schwarz RF,
Gillis J,
Sirokmany G,
Donati G,
Uribe-Lewis S,
Pavlidis P,
Murrell A,
Markowetz F,
Watt FM

Nature Cell Biology
  14 (7): 753-763; Jul 2012  
[Abstract]
[DOI] [Full Text]

Guilt by Association Is the Exception Rather Than the Rule in Gene Networks
Gillis J,
Pavlidis P

PLoS Computational Biology
  8 (3): Mar 2012  
[Abstract]
[DOI] [Full Text]

Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model
Stark KL,
Xu B,
Bagchi A,
Lai WS,
Liu H,
Hsu R,
Wan X,
Pavlidis P,
Mills AA,
Karayiorgou M,
Gogos JA

Nat Genet
  40 (6): 751-760; Jun 2008  
[Abstract]
[DOI] [Full Text] [PDF]

Progress and challenges in the computational prediction of gene function using networks
Pavlidis P,
Gillis J

F1000 Research
  1 (0): 2012 2012   NLM
[Abstract]
[DOI] [Full Text]


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