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10 Article(s) on File
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Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes
Law M,
Childs KL,
Campbell MS,
Stein JC,
Olson AJ,
Holt C,
Panchy N,
Lei J,
Jiao D,
Andorf CM,
Lawrence CJ,
Ware D,
Shiu SH,
Sun Y,
Jiang N,
Yandell M

Plant Physiol
  167 (1): 25-39; Jan 2015   Nlm
[DOI] [Full Text]

Expanding and Vetting Sorghum bicolor Gene Annotations through Transcriptome and Methylome Sequencing
Olson A,
Klein RR,
Dugas DV,
Lu ZY,
Regulski M,
Klein PE,
Ware D

Plant Genome
  7 (2): 20; Jul 2014   Thomson Reuters
[DOI] [Full Text]

Regulatory modules controlling maize inflorescence architecture
Eveland AL,
Goldshmidt A,
Pautler M,
Morohashi K,
Liseron-Monfils C,
Lewis MW,
Kumari S,
Hiraga S,
Yang F,
Unger-Wallace E,
Olson A,
Hake S,
Vollbrecht E,
Grotewold E,
Ware D,
Jackson D

Genome Research
  24 (3): 431-443; 2014   Nlm
[DOI] [Full Text]

Gramene 2013: comparative plant genomics resources
Monaco MK,
Stein J,
Naithani S,
Wei S,
Dharmawardhana P,
Kumari S,
Amarasinghe V,
Youens-Clark K,
Thomason J,
Preece J,
Pasternak S,
Olson A,
Jiao Y,
Lu Z,
Bolser D,
Kerhornou A,
Staines D,
Walts B,
Wu G,
DEustachio P,
Haw R,
Croft D,
Kersey PJ,
Stein L,
Jaiswal P,
Ware D

Nucleic Acids Research
  42 (0): D1193-9; Jan 2014   NLM
[DOI] [Full Text]

Features of 5-splice-site efficiency derived from disease-causing mutations and comparative genomics
Roca X,
Olson AJ,
Rao AR,
Enerly E,
Kristensen VN,
Borresen-Dale AL,
Andresen BS,
Krainer AR,
Sachidanandam R

Genome Res
  18 (1): 77-87; Jan 2008   PMCID: PMC2134769
[DOI] [Full Text] [PDF]

Analysis of large-scale sequencing of small RNAs
Olson AJ,
Brennecke J,
Aravin AA,
Hannon GJ,
Sachidanandam R

Pac Symp Biocomput
  13 (0): 126-36; 2008  
[Full Text] [PDF]

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context
Faith JJ,
Olson AJ,
Gardner TS,
Sachidanandam R

Bmc Bioinformatics
  8 (0): 344; Sep 2007   PMCID: PMC2238324
[DOI] [Full Text] [PDF]

RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs
Olson A,
Sheth N,
Lee JS,
Hannon GJ,
Sachidanandam R

Nucleic Acids Res
  34 (0): D153-7; Jan 1 2006  
[DOI] [Full Text] [PDF]

Rnai codex - a comprehensive RNAi resource
Olson A,
Sheth N,
Lee J,
Hannon GJ,
Sachidanandam R

Briefings in Bioinformatics
  6 (1): 104-106; Mar 2005  
[Full Text]

GeneSeer: a sage for gene names and genomic resources
Olson AJ,
Tully T,
Sachidanandam R

BMC Genomics
  6 (1): 134; 2005  

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