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9 Article(s) on File
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A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
Luo MC,
Gu YQ,
You FM,
Deal KR,
Ma Y,
Hu Y,
Huo N,
Wang Y,
Wang J,
Chen S,
Jorgensen CM,
Zhang Y,
McGuire PE,
Pasternak S,
Stein JC,
Ware D,
Kramer M,
McCombie WR,
Kianian SF,
Martis MM,
Mayer KF,
Sehgal SK,
Li W,
Gill BS,
Bevan MW,
Šimková H,
Doležel J,
Weining S,
Lazo GR,
Anderson OD,
Dvorak J

Proceedings of the National Academy of Sciences of the United States of America
  110 (19): 7940-7945; May 7 2013  
[DOI] [Full Text]

Analysis of the bread wheat genome using whole-genome shotgun sequencing
Brenchley R,
Spannagl M,
Pfeifer M,
Barker GL,
DAmore R,
Allen AM,
McKenzie N,
Kramer M,
Kerhornou A,
Bolser D,
Kay S,
Waite D,
Trick M,
Bancroft I,
Gu Y,
Huo N,
Luo MC,
Sehgal S,
Gill B,
Kianian S,
Anderson O,
Kersey P,
Dvorak J,
McCombie WR,
Hall A,
Mayer KF,
Edwards KJ,
Bevan MW,
Hall N

Nature
  491 (7426): 705-710; Nov 26 2012  
[Abstract]
[DOI] [Full Text]

Taking the Next Step: Building an Arabidopsis Information Portal
Baerenfaller K,
Bastow R,
Beynon J,
Brady S,
Brendel V,
Donaldson S,
Dooley R,
Forster M,
Friesner J,
Gifford D,
Grotewold E,
Gutierrez R,
Huala E,
Jaiswal P,
Joshi H,
Kersey P,
Liu L,
Loraine A,
Lyons E,
May S,
Mayer K,
MacLean D,
Meyers B,
Mueller L,
Muller R,
Muller HM,
Ouellette F,
Pires JC,
Provart N,
Staiger D,
Stanzione D,
Taylor J,
Taylor C,
Town C,
Toyoda T,
Vaughn M,
Walsh S,
Ware D,
Weckwerth W,
Int Arabidopsis I

Plant Cell
  24 (6): 2248-2256; Jun 2012  
[Abstract]
[DOI] [Full Text]

The tomato genome sequence provides insights into fleshy fruit evolution
Sato S,
Tabata S,
Hirakawa H,
Asamizu E,
Shirasawa K,
Isobe S,
Kaneko T,
Nakamura Y,
Shibata D,
Aoki K,
Egholm M,
Knight J,
Bogden R,
Li CB,
Shuang Y,
Xu X,
Pan SK,
Cheng SF,
Liu X,
Ren YY,
Wang J,
Albiero A,
Dal Pero F,
Todesco S,
Van Eck J,
Buels RM,
Bombarely A,
Gosselin JR,
Huang MY,
Leto JA,
Menda N,
Strickler S,
Mao LY,
Gao S,
Tecle IY,
York T,
Zheng Y,
Vrebalov JT,
Lee J,
Zhong SL,
Mueller LA,
Stiekema WJ,
Ribeca P,
Alioto T,
Yang WC,
Huang SW,
Du YC,
Zhang ZH,
Gao JC,
Guo YM,
Wang XX,
Li Y,
He J,
Li CY,
Cheng ZK,
Zuo JR,
Ren JF,
Zhao JH,
Yan LH,
Jiang HL,
Wang B,
Li HS,
Li ZJ,
Fu FY,
Chen BT,
Han B,
Feng Q,
Fan DL,
Wang Y,
Ling HQ,
Xue YB,
Ware D,
McCombie WR,
Lippman ZB,
Chia JM,
Jiang K,
Pasternak S,
Gelley L,
Kramer M,
Anderson LK,
Chang SB,
Royer SM,
Shearer LA,
Stack SM,
Rose JK,
Xu YM,
Eannetta N,
Matas AJ,
McQuinn R,
Tanksley SD,
Camara F,
Guigo R,
Rombauts S,
Fawcett J,
Van de Peer Y,
Zamir D,
Liang CB,
Spannagl M,
Gundlach H,
Bruggmann R,
Mayer K,
Jia ZQ,
Zhang JH,
Ye ZB,
Bishop GJ,
Butcher S,
Lopez-Cobollo R,
Buchan D,
Filippis I,
Abbott J,
Dixit R,
Singh M,
Singh A,
Pal JK,
Pandit A,
Singh PK,
Mahato AK,
Dogra V,
Gaikwad K,
Sharma TR,
Mohapatra T,
Singh NK,
Causse M,
Rothan C,
Schiex T,
Noirot C,
Bellec A,
Klopp C,
Delalande C,
Berges H,
Mariette J,
Frasse P,
Vautrin S,
Zouine M,
Latche A,
Rousseau C,
Regad F,
Pech JC,
Philippot M,
Bouzayen M,
Pericard P,
Osorio S,
del Carmen AF,
Monforte A,
Granell A,
Fernandez-Munoz R,
Conte M,
Lichtenstein G,
Carrari F,
De Bellis G,
Fuligni F,
Peano C,
Grandillo S,
Termolino P,
Pietrella M,
Fantini E,
Falcone G,
Fiore A,
Giuliano G,
Lopez L,
Facella P,
Perrotta G,
Daddiego L,
Bryan G,
Orozco M,
Pastor X,
Torrents D,
van Schriek K,
Feron RM,
van Oeveren J,
de Heer P,
daPonte L,
Jacobs-Oomen S,
Cariaso M,
Prins M,
van Eijk MJ,
Janssen A,
van Haaren MJ,
Jo SH,
Kim J,
Kwon SY,
Kim S,
Koo DH,
Lee S,
Hur CG,
Clouser C,
Rico A,
Hallab A,
Gebhardt C,
Klee K,
Jocker A,
Warfsmann J,
Gobel U,
Kawamura S,
Yano K,
Sherman JD,
Fukuoka H,
Negoro S,
Bhutty S,
Chowdhury P,
Chattopadhyay D,
Datema E,
Smit S,
Schijlen EW,
van de Belt J,
van Haarst JC,
Peters SA,
van Staveren MJ,
Henkens MH,
Mooyman PJ,
Hesselink T,
van Ham R,
Jiang GY,
Droege M,
Choi D,
Kang BC,
Kim BD,
Park M,
Yeom SI,
Lee YH,
Choi YD,
Li GC,
Gao JW,
Liu YS,
Huang SX,
Fernandez-Pedrosa V,
Collado C,
Zuniga S,
Wang GP,
Cade R,
Dietrich RA,
Rogers J,
Knapp S,
Fei ZJ,
White RA,
Thannhauser TW,
Giovannoni JJ,
Botella MA,
Gilbert L,
Gonzalez R,
Goicoechea JL,
Yu Y,
Kudrna D,
Collura K,
Wissotski M,
Wing R,
Schoof H,
Meyers BC,
Gurazada AB,
Green PJ,
Mathur S,
Vyas S,
Solanke AU,
Kumar R,
Gupta V,
Sharma AK,
Khurana P,
Khurana JP,
Tyagi AK,
Dalmay T,
Mohorianu I,
Walts B,
Chamala S,
Barbazuk WB,
Li JP,
Guo H,
Lee TH,
Wang YP,
Zhang D,
Paterson AH,
Wang XY,
Tang HB,
Barone A,
Chiusano ML,
Ercolano MR,
DAgostino N,
Di Filippo M,
Traini A,
Sanseverino W,
Frusciante L,
Seymour GB,
Elharam M,
Fu Y,
Hua A,
Kenton S,
Lewis J,
Lin SP,
Najar F,
Lai HS,
Qin BF,
Qu CM,
Shi RH,
White D,
White J,
Xing YB,
Yang KQ,
Yi J,
Yao ZY,
Zhou LP,
Roe BA,
Vezzi A,
DAngelo M,
Zimbello R,
Schiavon R,
Caniato E,
Rigobello C,
Campagna D,
Vitulo N,
Valle G,
Nelson DR,
De Paoli E,
Szinay D,
de Jong HH,
Bai YL,
Visser RG,
Lankhorst RM,
Beasley H,
McLaren K,
Nicholson C,
Riddle C,
Gianese G

Nature
  485 (7400): 635-641; May 2012  
[Abstract]
[DOI] [Full Text]

The Sorghum bicolor genome and the diversification of grasses
Paterson AH,
Bowers JE,
Bruggmann R,
Dubchak I,
Grimwood J,
Gundlach H,
Haberer G,
Hellsten U,
Mitros T,
Poliakov A,
Schmutz J,
Spannagl M,
Tang H,
Wang X,
Wicker T,
Bharti AK,
Chapman J,
Feltus FA,
Gowik U,
Grigoriev IV,
Lyons E,
Maher CA,
Martis M,
Narechania A,
Otillar RP,
Penning BW,
Salamov AA,
Wang Y,
Zhang L,
Carpita NC,
Freeling M,
Gingle AR,
Hash CT,
Keller B,
Klein P,
Kresovich S,
McCann MC,
Ming R,
Peterson DG,
Mehboob ur R,
Ware DH,
Westhoff P,
Mayer KF,
Messing J,
Rokhsar DS

Nature
  457 (7229): 551-556; Jan 29 2009  
[Abstract]
[DOI] [Full Text] [PDF]

Expressed sequence tag analysis in Cycas, the most primitive living seed plant
Brenner ED,
Stevenson DW,
McCombie RW,
Katari MS,
Rudd SA,
Mayer KF,
Palenchar PM,
Runko SJ,
Twigg RW,
Dai G,
Martienssen RA,
Benfey PN,
Coruzzi GM

Genome biology
  4 (12): R78; 2003  
[Abstract]
[DOI] [Full Text]

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Kaul S,
Koo HL,
Jenkins J,
Rizzo M,
Rooney T,
Tallon LJ,
Feldblyum T,
Nierman W,
Benito MI,
Lin XY,
Town CD,
Venter JC,
Fraser CM,
Tabata S,
Nakamura Y,
Kaneko T,
Sato S,
Asamizu E,
Kato T,
Kotani H,
Sasamoto S,
Ecker JR,
Theologis A,
Federspiel NA,
Palm CJ,
Osborne BI,
Shinn P,
Conway AB,
Vysotskaia VS,
Dewar K,
Conn L,
Lenz CA,
Kim CJ,
Hansen NF,
Liu SX,
Buehler E,
Altafi H,
Sakano H,
Dunn P,
Lam B,
Pham PK,
Chao Q,
Nguyen M,
Yu GX,
Chen HM,
Southwick A,
Lee JM,
Miranda M,
Toriumi MJ,
Davis RW,
Wambutt R,
Murphy G,
Dusterhoft A,
Stiekema W,
Pohl T,
Entian KD,
Terryn N,
Volckaert G,
Salanoubat M,
Choisne N,
Rieger M,
Ansorge W,
Unseld M,
Fartmann B,
Valle G,
Artiguenave F,
Weissenbach J,
Quetier F,
Wilson RK,
de la Bastide M,
Sekhon M,
Huang E,
Spiegel L,
Gnoj L,
Pepin K,
Murray J,
Johnson D,
Habermann K,
Dedhia N,
Parnell L,
Preston R,
Hillier L,
Chen E,
Marra M,
Martienssen R,
McCombie WR,
Mayer K,
White O,
Bevan M,
Lemcke K,
Creasy TH,
Bielke C,
Haas B,
Haase D,
Maiti R,
Rudd S,
Peterson J,
Schoof H,
Frishman D,
Morgenstern B,
Zaccaria P,
Ermolaeva M,
Pertea M,
Quackenbush J,
Volfovsky N,
Wu DY,
Lowe TM,
Salzberg SL,
Mewes HW,
Rounsley S,
Bush D,
Subramaniam S,
Levin I,
Norris S,
Schmidt R,
Acarkan A,
Bancroft I,
Brennicke A,
Eisen JA,
Bureau T,
Legault BA,
Le QH,
Agrawal N,
Yu Z,
Copenhaver GP,
Luo S,
Pikaard CS,
Preuss D,
Paulsen IT,
Sussman M,
Britt AB,
Selinger DA,
Pandey R,
Mount DW,
Chandler VL,
Jorgensen RA,
Pikaard C,
Juergens G,
Meyerowitz EM,
Dangl J,
Jones JD,
Chen M

Nature
  408 (6814): 796-815; Dec 14 2000  
[Abstract]
[Full Text]

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana
Tabata S,
Kaneko T,
Nakamura Y,
Kotani H,
Kato T,
Asamizu E,
Miyajima N,
Sasamoto S,
Kimura T,
Hosouchi T,
Kawashima K,
Kohara M,
Matsumoto M,
Matsuno A,
Muraki A,
Nakayama S,
Nakazaki N,
Naruo K,
Okumura S,
Shinpo S,
Takeuchi C,
Wada T,
Watanabe A,
Yamada M,
Yasuda M,
Sato S,
de la Bastide M,
Huang E,
Spiegel L,
Gnoj L,
OShaughnessy A,
Preston R,
Habermann K,
Murray J,
Johnson D,
Rohlfing T,
Nelson J,
Stoneking T,
Pepin K,
Spieth J,
Sekhon M,
Armstrong J,
Becker M,
Belter E,
Cordum H,
Cordes M,
Courtney L,
Courtney W,
Dante M,
Du H,
Edwards J,
Fryman J,
Haakensen B,
Lamar E,
Latreille P,
Leonard S,
Meyer R,
Mulvaney E,
Ozersky P,
Riley A,
Strowmatt C,
Wagner-McPherson C,
Wollam A,
Yoakum M,
Bell M,
Dedhia N,
Parnell L,
Shah R,
Rodriguez M,
See LH,
Vil D,
Baker J,
Kirchoff K,
Toth K,
King L,
Bahret A,
Miller B,
Marra M,
Martienssen R,
McCombie WR,
Wilson RK,
Murphy G,
Bancroft I,
Volckaert G,
Wambutt R,
Dusterhoft A,
Stiekema W,
Pohl T,
Entian KD,
Terryn N,
Hartley N,
Bent E,
Johnson S,
Langham SA,
McCullagh B,
Robben J,
Grymonprez B,
Zimmermann W,
Ramsperger U,
Wedler H,
Balke K,
Wedler E,
Peters S,
van Staveren M,
Dirkse W,
Mooijman P,
Lankhorst RK,
Weitzenegger T,
Bothe G,
Rose M,
Hauf J,
Berneiser S,
Hempel S,
Feldpausch M,
Lamberth S,
Villarroel R,
Gielen J,
Ardiles W,
Bents O,
Lemcke K,
Kolesov G,
Mayer K,
Rudd S,
Schoof H,
Schueller C,
Zaccaria P,
Mewes HW,
Bevan M,
Fransz P

Nature
  408 (6814): 823-6; Dec 14 2000  
[Abstract]
[DOI] [Full Text]

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana
Mayer K,
Schuller C,
Wambutt R,
Murphy G,
Volckaert G,
Pohl T,
Dusterhoft A,
Stiekema W,
Entian KD,
Terryn N,
Harris B,
Ansorge W,
Brandt P,
Grivell L,
Rieger M,
Weichselgartner M,
de Simone V,
Obermaier B,
Mache R,
Muller M,
Kreis M,
Delseny M,
Puigdomenech P,
Watson M,
Schmidtheini T,
Reichert B,
Portatelle D,
Perez-Alonso M,
Boutry M,
Bancroft I,
Vos P,
Hoheisel J,
Zimmermann W,
Wedler H,
Ridley P,
Langham SA,
McCullagh B,
Bilham L,
Robben J,
Van der Schueren J,
Grymonprez B,
Chuang YJ,
Vandenbussche F,
Braeken M,
Weltjens I,
Voet M,
Bastiaens I,
Aert R,
Defoor E,
Weitzenegger T,
Bothe G,
Ramsperger U,
Hilbert H,
Braun M,
Holzer E,
Brandt A,
Peters S,
van Staveren M,
Dirske W,
Mooijman P,
Klein Lankhorst R,
Rose M,
Hauf J,
Kotter P,
Berneiser S,
Hempel S,
Feldpausch M,
Lamberth S,
Van den Daele H,
De Keyser A,
Buysshaert C,
Gielen J,
Villarroel R,
De Clercq R,
Van Montagu M,
Rogers J,
Cronin A,
Quail M,
Bray-Allen S,
Clark L,
Doggett J,
Hall S,
Kay M,
Lennard N,
McLay K,
Mayes R,
Pettett A,
Rajandream MA,
Lyne M,
Benes V,
Rechmann S,
Borkova D,
Blocker H,
Scharfe M,
Grimm M,
Lohnert TH,
Dose S,
de Haan M,
Maarse A,
Schafer M,
Muller-Auer S,
Gabel C,
Fuchs M,
Fartmann B,
Granderath K,
Dauner D,
Herzl A,
Neumann S,
Argiriou A,
Vitale D,
Liguori R,
Piravandi E,
Massenet O,
Quigley F,
Clabauld G,
Mundlein A,
Felber R,
Schnabl S,
Hiller R,
Schmidt W,
Lecharny A,
Aubourg S,
Chefdor F,
Cooke R,
Berger C,
Montfort A,
Casacuberta E,
Gibbons T,
Weber N,
Vandenbol M,
Bargues M,
Terol J,
Torres A,
Perez-Perez A,
Purnelle B,
Bent E,
Johnson S,
Tacon D,
Jesse T,
Heijnen L,
Schwarz S,
Scholler P,
Heber S,
Francs P,
Bielke C,
Frishman D,
Haase D,
Lemcke K,
Mewes HW,
Stocker S,
Zaccaria P,
Bevan M,
Wilson RK,
de la Bastide M,
Habermann K,
Parnell L,
Dedhia N,
Gnoj L,
Schutz K,
Huang E,
Spiegel L,
Sehkon M,
Murray J,
Sheet P,
Cordes M,
Abu-Threideh J,
Stoneking T,
Kalicki J,
Graves T,
Harmon G,
Edwards J,
Latreille P,
Courtney L,
Cloud J,
Abbott A,
Scott K,
Johnson D,
Minx P,
Bentley D,
Fulton B,
Miller N,
Greco T,
Kemp K,
Kramer J,
Fulton L,
Mardis E,
Dante M,
Pepin K,
Hillier L,
Nelson J,
Spieth J,
Ryan E,
Andrews S,
Geisel C,
Layman D,
Du H,
Ali J,
Berghoff A,
Jones K,
Drone K,
Cotton M,
Joshu C,
Antonoiu B,
Zidanic M,
Strong C,
Sun H,
Lamar B,
Yordan C,
Ma P,
Zhong J,
Preston R,
Vil D,
Shekher M,
Matero A,
Shah R,
Swaby IK,
OShaughnessy A,
Rodriguez M,
Hoffmann J,
Till S,
Granat S,
Shohdy N,
Hasegawa A,
Hameed A,
Lodhi M,
Johnson A,
Chen E,
Marra M,
Martienssen R,
McCombie WR

Nature
  402 (6763): 769-77; Dec 16 1999  
[Abstract]
[DOI] [Full Text]


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