Cold Spring Harbor Library  CSHL: Home
   Home       Services       Archives       About Us   
 
CSHL Publication List
CSHL Authors Publications
Go back to Search Mode

          
Sort by   in order
220 Article(s) on File
Page 1 of 1
Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure
Grand RS,
Pichugina T,
Gehlen LR,
Jones MB,
Tsai P,
Allison JR,
Martienssen R,
OSullivan JM

Nucleic Acids Research
  (0): Oct 23 2014   Nlm
[Abstract]
[DOI] [Full Text]

Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize
Thiebaut F,
Rojas CA,
Grativol C,
Motta MR,
Vieira T,
Regulski M,
Martienssen RA,
Farinelli L,
Hemerly AS,
Ferreira PC

BMC Genomics
  15 (0): Sep 6 2014   NLM
[Abstract]
[DOI] [Full Text]

Efficient transformation and artificial miRNA gene silencing in Lemna minor
Canto-Pastor A,
Molla-Morales A,
Ernst E,
Dahl W,
Zhai J,
Yan Y,
Meyers BC,
Shanklin J,
Martienssen R

Plant Biol (Stuttg)
  (0): Jul 2 2014   Nlm
[Abstract]
[DOI] [Full Text]

Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe
Grand RS,
Martienssen R,
OSullivan JM

Mitochondrion
  17 (0): 141-149; Jul 2014   NLM
[Abstract]
[DOI] [Full Text]

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum
Grativol C,
Regulski M,
Bertalan M,
McCombie WR,
da Silva FR,
Zerlotini Neto A,
Vicentini R,
Farinelli L,
Hemerly AS,
Martienssen RA,
Ferreira PC

Plant Journal
  79 (1): 162-172; Jul 2014   NLM
[DOI] [Full Text]

The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB
Singh R,
Low ET,
Ooi LC,
Ong-Abdullah M,
Nookiah R,
Ting NC,
Marjuni M,
Chan PL,
Ithnin M,
Manaf MA,
Nagappan J,
Chan KL,
Rosli R,
Halim MA,
Azizi N,
Budiman MA,
Lakey N,
Bacher B,
Van Brunt A,
Wang C,
Hogan M,
He D,
MacDonald JD,
Smith SW,
Ordway JM,
Martienssen RA,
Sambanthamurthi R

Nat Commun
  5 (0): 4106; Jun30 2014   Nlm
[Abstract]
[DOI] [Full Text]

Transgenerational Epigenetic Inheritance: Myths and Mechanisms
Heard E,
Martienssen RA

Cell
  157 (1): 95-109; Mar 27 2014   NLM
[Abstract]
[DOI] [Full Text]

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis
Creasey KM,
Zhai J,
Borges F,
Van Ex F,
Regulski M,
Meyers BC,
Martienssen RA

Nature
  508 (7496): 411-415; Mar 16 2014   NLM
[Abstract]
[DOI] [Full Text]

Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication
Jacob Y,
Bergamin E,
Donoghue MT,
Mongeon V,
LeBlanc C,
Voigt P,
Underwood CJ,
Brunzelle JS,
Michaels SD,
Reinberg D,
Couture JF,
Martienssen RA

Science
  343 (6176): 1249-53; Mar 14 2014   Nlm
[Abstract]
[DOI] [Full Text]

CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing
Kuscu C,
Zaratiegui M,
Kim HS,
Wah DA,
Martienssen RA,
Schalch T,
Joshua-Tor L

Proc Natl Acad Sci U S A
  (0): Jan 21 2014   Nlm
[Abstract]
[DOI] [Full Text]

Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion
Thiebaut F,
Grativol C,
Tanurdzic M,
Carnavale-Bottino M,
Vieira T,
Motta MR,
Rojas C,
Vincentini R,
Chabregas SM,
Hemerly AS,
Martienssen RA,
Ferreira PC

PLoS One
  9 (4): e93822; 2014   NLM
[Abstract]
[DOI] [Full Text]

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK
Singh R,
Low ET,
Ooi LC,
Ong-Abdullah M,
Ting NC,
Nagappan J,
Nookiah R,
Amiruddin MD,
Rosli R,
Manaf MA,
Chan KL,
Halim MA,
Azizi N,
Lakey N,
Smith SW,
Budiman MA,
Hogan M,
Bacher B,
Van Brunt A,
Wang C,
Ordway JM,
Sambanthamurthi R,
Martienssen RA

Nature
  500 (7462): 340-344; Aug 15 2013   NLM
[Abstract]
[DOI] [Full Text]

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds
Singh R,
Ong-Abdullah M,
Low ET,
Manaf MA,
Rosli R,
Nookiah R,
Ooi LC,
Ooi SE,
Chan KL,
Halim MA,
Azizi N,
Nagappan J,
Bacher B,
Lakey N,
Smith SW,
He D,
Hogan M,
Budiman MA,
Lee EK,
Desalle R,
Kudrna D,
Goicoechea JL,
Wing RA,
Wilson RK,
Fulton RS,
Ordway JM,
Martienssen RA,
Sambanthamurthi R

Nature
  500 (7462): 335-339; Aug 15 2013   NLM
[Abstract]
[DOI] [Full Text]

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis
Vu TM,
Nakamura M,
Calarco JP,
Susaki D,
Lim PQ,
Kinoshita T,
Higashiyama T,
Martienssen RA,
Berger F

Development
  140 (14): 2953-2960; Jul 2013   NLM
[DOI] [Full Text]

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
Regulski M,
Lu Z,
Kendall J,
Donoghue MT,
Reinders J,
Llaca V,
Deschamps S,
Smith A,
Levy D,
McCombie WR,
Tingey S,
Rafalski A,
Hicks J,
Ware D,
Martienssen R

Genome Res
  (0): Jun 5 2013   NLM
[Abstract]
[DOI] [Full Text]

Establishing epigenetic variation during genome reprogramming
Borges F,
Martienssen RA

RNA Biol
  10 (4): 490-4; Apr 1 2013   NLM
[Abstract]
[DOI] [Full Text]

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
Castel SE,
Martienssen RA

Nat Rev Genet
  14 (2): 100-12; Feb 14 2013   NLM
[Abstract]
[DOI] [Full Text]

Lsd1 and Lsd2 Control Programmed Replication Fork Pauses and Imprinting in Fission Yeast
Holmes A,
Roseaulin L,
Schurra C,
Waxin H,
Lambert S,
Zaratiegui M,
Martienssen R,
Arcangioli B

Cell Reports
  2 (6): 1513-1520; Dec 27 2012  
[Abstract]
[DOI] [Full Text]

Reprogramming heterochromatin and its consequences in the germline
Martienssen R

Genes Genetic Systems
  87 (6): 371-371; Dec 2012   Thomson Reuters
[Full Text]

Imprinting: DNA methyltransferases illuminate reprogramming
Calarco JP,
Martienssen RA

Curr Biol
  22 (21): R929-31; Nov 6 2012   NLM
[Abstract]
[DOI] [Full Text]

Cell signaling and gene regulation
Paszkowski J,
Martienssen RA

Current Opinion in Plant Biology
  15 (5): 493-495; Nov 2012  
[DOI] [Full Text]

FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei
Borges F,
Gardner R,
Lopes T,
Calarco JP,
Boavida LC,
Slotkin RK,
Martienssen RA,
Becker JD

Plant methods
  8 (1): 44; Oct 17 2012  
[Abstract]
[DOI] [Full Text]

SnapShot: Small RNA-Mediated Epigenetic Modifications
Zaratiegui M,
Martienssen RA

Cell
  151 (2): 456-456 e1; Oct 12 2012  
[DOI] [Full Text]

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA
Calarco J,
Borges F,
Donoghue M,
Van Ex F,
Jullien P,
Lopes T,
Gardner R,
Berger F,
Feijó J,
Becker J,
Martienssen R

Cell
  151 (1): 194-205; Sep 28 2012  
[DOI] [Full Text]

Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny
Ren J,
Martienssen RA

The EMBO journal
  31 (15): 3237-8; Aug 1 2012  
[DOI] [Full Text]

Computational identification and analysis of novel sugarcane microRNAs
Thiebaut F,
Grativol C,
Carnavale-Bottino M,
Rojas CA,
Tanurdzic M,
Farinelli L,
Martienssen RA,
Hemerly AS,
Ferreira PC

BMC genomics
  13 (0): 290; Jul 2 2012  
[Abstract]
[DOI] [Full Text]

Pod corn is caused by rearrangement at the Tunicate1 locus
Han JJ,
Jackson D,
Martienssen R

The Plant cell
  24 (7): 2733-44; Jul 2012  
[Abstract]
[DOI] [Full Text]

Molecular biology. All packed up and ready to go
Jacob Y,
Martienssen R

Science
  336 (6087): 1391-2; Jun 15 2012  
[DOI] [Full Text]

All Packed Up and Ready to Go
Jacob Y,
Martienssen R

Science
  336 (6087): 1391-1392; Jun 15 2012  
[DOI] [Full Text]

Reading the Second Code: Mapping Epigenomes to Understand Plant Growth, Development, and Adaptation to the Environment
Berger F,
Cao XF,
Chandler V,
Dennis L,
Martienssen R,
Meyers B,
Pikaard C,
Peacock J,
Richards E,
Wagner D,
Weigel D,
Colot V,
Deal R,
Dean C,
Ecker J,
Gehring M,
Gong ZZ,
Gregory B,
Rodrigo G,
Gutierrez-Marcos J,
Hasebe M,
Hwang ID,
Jacobsen S,
Kakutani T,
Li JY,
Michaels S,
Noh YS,
Provart N,
Vaughn M,
EPIC Planning Comm

The Plant cell
  24 (6): 2257-2261; Jun 2012  
[Abstract]
[DOI] [Full Text]

Reprogramming the Epigenome in Arabidopsis Pollen
Borges F,
Calarco JP,
Martienssen RA

Cold Spring Harb Symp Quant Biol
  77 (0): 1-5; May 30 2012   NLM
[Abstract]
[DOI] [Full Text]

The persistence of a silent memory
Zaratiegui M,
Martienssen R

Nature genetics
  44 (2): 118-9; Feb 2012  
[Abstract]
[DOI] [Full Text]

A functional phylogenomic view of the seed plants
Lee EK,
Cibrian-Jaramillo A,
Kolokotronis SO,
Katari MS,
Stamatakis A,
Ott M,
Chiu JC,
Little DP,
Stevenson DW,
McCombie WR,
Martienssen RA,
Coruzzi G,
Desalle R

PLoS genetics
  7 (12): e1002411; Dec 2011  
[Abstract]
[DOI] [Full Text]

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II
Zaratiegui BM,
Castel SE,
Irvine DV,
Kloc A,
Ren J,
Li F,
de Castro E,
Marín L,
Chang AY,
Goto DB,
Cande WZ,
Antequera F,
Arcangioli B,
Martienssen RA

Nature
  479 (7371): 135-138; Nov 3 2011  
[Abstract]
[DOI] [Full Text]

Multiple roles for small RNAs during plant reproduction
Van Ex F,
Jacob Y,
Martienssen RA

Current opinion in plant biology
  14 (5): 588-93; Oct 2011  
[Abstract]
[DOI] [Full Text]

RNA interference and heterochromatin assembly
Volpe T,
Martienssen RA

Cold Spring Harbor perspectives in biology
  3 (9): a003731; Sep 2011  
[Abstract]
[DOI] [Full Text]

Coordination of DNA replication and histone modification by the Rik1-Dos2 complex
Li F,
Martienssen R,
Cande WZ

Nature
  475 (7355): 244-8; Jul 14 2011  
[Abstract]
[DOI] [Full Text]

Comparative functional genomics of the fission yeasts
Rhind N,
Chen Z,
Yassour M,
Thompson DA,
Haas BJ,
Habib N,
Wapinski I,
Roy S,
Lin MF,
Heiman DI,
Young SK,
Furuya K,
Guo Y,
Pidoux A,
Chen HM,
Robbertse B,
Goldberg JM,
Aoki K,
Bayne EH,
Berlin AM,
Desjardins CA,
Dobbs E,
Dukaj L,
Fan L,
FitzGerald MG,
French C,
Gujja S,
Hansen K,
Keifenheim D,
Levin JZ,
Mosher RA,
Muller CA,
Pfiffner J,
Priest M,
Russ C,
Smialowska A,
Swoboda P,
Sykes SM,
Vaughn M,
Vengrova S,
Yoder R,
Zeng Q,
Allshire R,
Baulcombe D,
Birren BW,
Brown W,
Ekwall K,
Kellis M,
Leatherwood J,
Levin H,
Margalit H,
Martienssen R,
Nieduszynski CA,
Spatafora JW,
Friedman N,
Dalgaard JZ,
Baumann P,
Niki H,
Regev A,
Nusbaum C

Science
  332 (6032): 930-6; May 20 2011  
[Abstract]
[DOI] [Full Text]

Genome reprogramming and small interfering RNA in the Arabidopsis germline
Calarco JP,
Martienssen RA

Current opinion in genetics development
  21 (2): 134-9; Apr 2011  
[Abstract]
[DOI] [Full Text]

MicroRNA activity in the Arabidopsis male germline
Borges F,
Pereira PA,
Slotkin RK,
Martienssen RA,
Becker JD

Journal of experimental botany
  62 (5): 1611-20; Mar 2011  
[Abstract]
[DOI] [Full Text]

Chromatin reprogramming: gender equality during Arabidopsis germline differentiation
Jacob Y,
Martienssen RA

Current biology : CB
  21 (1): R20-2; Jan 11 2011  
[Abstract]
[DOI] [Full Text]

CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR
Zaratiegui BM,
Vaughn MW,
Irvine DV,
Goto D,
Watt S,
Bahler J,
Arcangioli B,
Martienssen RA

Nature
  469 (7328): 112-5; Jan 6 2011   PMC3057531
[Abstract]
[DOI]

H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases
Hansen KR,
Hazan I,
Shanker S,
Watt S,
Verhein-Hansen J,
Bahler J,
Martienssen RA,
Partridge JF,
Cohen A,
Thon G

PLoS genetics
  7 (1): e1001268; 2011  
[Abstract]
[DOI] [Full Text]

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state
Lee TJ,
Pascuzzi PE,
Settlage SB,
Shultz RW,
Tanurdzic M,
Rabinowicz PD,
Menges M,
Zheng P,
Main D,
Murray JA,
Sosinski B,
Allen GC,
Martienssen RA,
Hanley-Bowdoin L,
Vaughn MW,
Thompson WF

PLoS genetics
  6 (6): e1000982; Jun 2010  
[Abstract]
[DOI] [Full Text]

Molecular biology. Small RNA makes its move
Martienssen RA

Science
  328 (5980): 834-5; May 14 2010  
[Abstract]
[DOI] [Full Text] [PDF]

Small RNA Makes Its Move
Martienssen R

Science
  328 (5980): 834-835; May 14 2010  
[DOI] [Full Text]

Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis
Martienssen RA

The New phytologist
  186 (1): 46-53; Apr 2010  
[Abstract]
[DOI] [Full Text]

Control of female gamete formation by a small RNA pathway in Arabidopsis
Olmedo-Monfil V,
Duran-Figueroa N,
Arteaga-Vazquez M,
Demesa-Arevalo E,
Autran D,
Grimanelli D,
Slotkin RK,
Martienssen RA,
Vielle-Calzada JP

Nature
  464 (7288): 628-32; Mar 25 2010  
[Abstract]
[DOI] [Full Text]

Germline reprogramming of heterochromatin in plants
Creasey KM,
Martienssen RA
In:
Array
(ed. ) : Cold Spring Harbor P; 2010. 75: 269-274  
[Abstract]
[DOI]

Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution
Cibrian-Jaramillo A,
De la Torre-Barcena JE,
Lee EK,
Katari MS,
Little DP,
Stevenson DW,
Martienssen RA,
Coruzzi GM,
DeSalle R

Genome Biology and Evolution
  2 (0): 225-239; 2010   PMCID: PMC2997538
[Abstract]
[DOI] [Full Text] [PDF]

The B73 Maize Genome: Complexity, Diversity, and Dynamics
Schnable PS,
Ware DH,
Fulton RS,
Stein JC,
Wei FS,
Pasternak S,
Liang CZ,
Zhang JW,
Fulton L,
Graves TA,
Minx P,
Reily AD,
Courtney L,
Kruchowski SS,
Tomlinson C,
Strong C,
Delehaunty K,
Fronick C,
Courtney B,
Rock SM,
Belter E,
Du FY,
Kim K,
Abbott RM,
Cotton M,
Levy A,
Marchetto P,
Ochoa K,
Jackson SM,
Gillam B,
Chen WZ,
Yan L,
Higginbotham J,
Cardenas M,
Waligorski J,
Applebaum E,
Phelps L,
Falcone J,
Kanchi K,
Thane T,
Scimone A,
Thane N,
Henke J,
Wang T,
Ruppert J,
Shah N,
Rotter K,
Hodges J,
Ingenthron E,
Cordes M,
Kohlberg S,
Sgro J,
Delgado B,
Mead K,
Chinwalla A,
Leonard S,
Crouse K,
Collura K,
Kudrna D,
Currie J,
He RF,
Angelova A,
Rajasekar S,
Mueller T,
Lomeli R,
Scara G,
Ko A,
Delaney K,
Wissotski M,
Lopez G,
Campos D,
Braidotti M,
Ashley E,
Golser W,
Kim H,
Lee S,
Lin JK,
Dujmic Z,
Kim W,
Talag J,
Zuccolo A,
Fan C,
Sebastian A,
Kramer MR,
Spiegel L,
Nascimento L,
Zutavern T,
Miller B,
Ambroise C,
Muller S,
Spooner W,
Narechania A,
Ren LY,
Wei S,
Kumari S,
Faga BP,
Levy MJ,
McMahan L,
Van Buren P,
Vaughn MW,
Ying K,
Yeh CT,
Emrich SJ,
Jia Y,
Kalyanaraman A,
Hsia AP,
Barbazuk WB,
Baucom RS,
Brutnell TP,
Carpita NC,
Chaparro C,
Chia JM,
Deragon JM,
Estill JC,
Fu Y,
Jeddeloh JA,
Han YJ,
Lee H,
Li PH,
Lisch DR,
Liu SZ,
Liu ZJ,
Nagel DH,
McCann MC,
SanMiguel P,
Myers AM,
Nettleton D,
Nguyen J,
Penning BW,
Ponnala L,
Schneider KL,
Schwartz DC,
Sharma A,
Soderlund C,
Springer NM,
Sun Q,
Wang H,
Waterman M,
Westerman R,
Wolfgruber TK,
Yang LX,
Yu Y,
Zhang LF,
Zhou SG,
Zhu Q,
Bennetzen JL,
Dawe RK,
Jiang JM,
Jiang N,
Presting GG,
Wessler SR,
Aluru S,
Martienssen RA,
Clifton SW,
McCombie WR,
Wing RA,
Wilson RK

Science
  326 (5956): 1112-1115; Nov 20 2009  
[Abstract]
[DOI] [Full Text] [PDF]

Detailed analysis of a contiguous 22-Mb region of the maize genome
Wei F,
Stein JC,
Liang C,
Zhang J,
Fulton RS,
Baucom RS,
De Paoli E,
Zhou S,
Yang L,
Han Y,
Pasternak S,
Narechania A,
Zhang L,
Yeh CT,
Ying K,
Nagel DH,
Collura K,
Kudrna D,
Currie J,
Lin J,
Kim H,
Angelova A,
Scara G,
Wissotski M,
Golser W,
Courtney L,
Kruchowski S,
Graves TA,
Rock SM,
Adams S,
Fulton LA,
Fronick C,
Courtney W,
Kramer M,
Spiegel L,
Nascimento L,
Kalyanaraman A,
Chaparro C,
Deragon JM,
Miguel PS,
Jiang N,
Wessler SR,
Green PJ,
Yu Y,
Schwartz DC,
Meyers BC,
Bennetzen JL,
Martienssen RA,
McCombie WR,
Aluru S,
Clifton SW,
Schnable PS,
Ware D,
Wilson RK,
Wing RA

PLoS genetics
  5 (11): e1000728; Nov 2009  
[Abstract]
[DOI] [Full Text]

Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing
Irvine DV,
Goto DB,
Vaughn MW,
Nakaseko Y,
McCombie WR,
Yanagida M,
Martienssen RA

Genome Res
  19 (6): 1077-1083; Jul 2009   PMCID: PMC2694473
[Abstract]
[DOI] [Full Text] [PDF]

Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana
Schwab R,
Maizel A,
Ruiz-Ferrer V,
Garcia D,
Bayer M,
Crespi M,
Voinnet O,
Martienssen RA

PloS one
  4 (6): e5980; Jun 19 2009  
[Abstract]
[DOI] [Full Text]

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
Slotkin RK,
Vaughn M,
Borges F,
Tanurdzic M,
Becker JD,
Feijo JA,
Martienssen RA

Cell
  136 (3): 461-72; Feb 6 2009  
[Abstract]
[DOI] [Full Text]

Darwins Abominable Mystery: the role of RNA interference in the evolution of flowering plants
Cibrian-Jaramillo A,
Martienssen RA

Cold Spring Harbor symposia on quantitative biology
  74 (0): 267-73; 2009  
[Abstract]
[DOI] [Full Text]

Nucleolar dominance and DNA methylation directed by small interfering RNA
Finigan P,
Martienssen RA

Molecular cell
  32 (6): 753-4; Dec 26 2008  
[Abstract]
[DOI] [Full Text]

Epigenomic consequences of immortalized plant cell suspension culture
Tanurdzic M,
Vaughn MW,
Jiang H,
Lee TJ,
Slotkin RK,
Sosinski B,
Thompson WF,
Doerge RW,
Martienssen RA

PLoS biology
  6 (12): 2880-95; Dec 9 2008  
[Abstract]
[DOI] [Full Text]

Criteria for Annotation of Plant MicroRNAs
Meyers BC,
Axtell MJ,
Bartel B,
Bartel DP,
Baulcombe D,
Bowman JL,
Cao X,
Carrington JC,
Chen XM,
Green PJ,
Griffiths-Jones S,
Jacobsen SE,
Mallory AC,
Martienssen RA,
Poethig RS,
Qi YJ,
Vaucheret H,
Voinnet O,
Watanabe Y,
Weigel D,
Zhui JK

The Plant cell
  20 (12): 3186-3190; Dec 2008  
[Abstract]
[DOI] [Full Text]

ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription
Masuda HP,
Cabral LM,
De Veylder L,
Tanurdzic M,
de Almeida Engler J,
Geelen D,
Inze D,
Martienssen RA,
Ferreira PC,
Hemerly AS

EMBO Journal
  27 (20): 2746–2756; Oct 22 2008  
[Abstract]
[DOI] [Full Text] [PDF]

Lid2 Is Required for Coordinating H3K4 and H3K9 Methylation of Heterochromatin and Euchromatin
Li F,
Huarte M,
Zaratiegui BM,
Vaughn MW,
Shi Y,
Martienssen RA,
Cande WZ

Cell
  135 (2): 272-283; Oct 17 2008  
[Abstract]
[DOI] [Full Text] [PDF]

RNAi, heterochromatin and the cell cycle
Kloc A,
Martienssen RA

Trends Genet
  24 (10): 511-517 ; Oct 2008  
[Abstract]
[DOI] [Full Text] [PDF]

Kismeth: analyzer of plant methylation states through bisulfite sequencing
Gruntman E,
Qi Y,
Slotkin RK,
Roeder T,
Martienssen RA,
Sachidanandam R

BMC bioinformatics
  9 (0): 371; Sep 11 2008  
[Abstract]
[DOI] [Full Text]

Moving AHEAD with an international human epigenome project
Jones PA,
Archer TK,
Baylin SB,
Beck S,
Berger S,
Bernstein BE,
Carpten JD,
Clark SJ,
Costello JF,
Doerge RW,
Esteller M,
Feinberg AP,
Gingeras TR,
Greally JM,
Henikoff S,
Herman JG,
Jackson-Grusby L,
Jenuwein T,
Jirtle RL,
Kim YJ,
Laird PW,
Lim B,
Martienssen R,
Polyak K,
Stunnenberg H,
Tlsty TD,
Tycko B,
Ushijima T,
Zhu JD,
Pirrotta V,
Allis CD,
Elgin SC,
Rine J,
Wu C,
Amer Assoc Canc Res ,
European Union Netwo

Nature
  454 (7205): 711-715; Aug 7 2008  
[DOI] [Full Text]

Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis
Rosin FM,
Watanabe N,
Cacas JL,
Kato N,
Arroyo JM,
Fang Y,
May B,
Vaughn MW,
Simorowski J,
Ramu U,
McCombie RW,
Spector DL,
Martienssen RA,
Lam E

Plant J
  55 (3): 514-525; Aug 2008  
[Abstract]
[DOI] [Full Text] [PDF]

RNA Interference Guides Histone Modification during the S Phase of Chromosomal Replication
Kloc A,
Zaratiegui M,
Nora E,
Martienssen RA

Curr Biol
  18 (7): 490-5; Apr 8 2008   PMCID: PMC2408823
[Abstract]
[DOI] [Full Text] [PDF]

Epigenetic interactions between transposons and genes: lessons from plants
Weil C,
Martienssen R

Current opinion in genetics development
  18 (2): 188-92; Apr 2008  
[Abstract]
[DOI] [Full Text]

Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins
Pinon V,
Etchells JP,
Rossignol P,
Collier SA,
Arroyo JM,
Martienssen RA,
Byrne ME

Development
  135 (7): 1315-24; Apr 2008  
[Abstract]
[DOI] [Full Text]

Epigenetic inheritance and reprogramming in plants and fission yeast
Martienssen RA,
Kloc A,
Slotkin RK,
Tanurdzic M

Cold Spring Harbor symposia on quantitative biology
  73 (0): 265-71; 2008  
[Abstract]
[DOI] [Full Text]

Great leap forward? Transposable elements, small interfering RNA and adaptive Lamarckian evolution
Martienssen R

The New phytologist
  179 (3): 570-2; 2008  
[DOI] [Full Text]

New approaches for the analysis of Arabidopsis thaliana small RNAs
Boccara M,
Sarazin A,
Billoud B,
Jolly V,
Martienssen R,
Baulcombe D,
Colot V

Biochimie
  89 (10): 1252-6; Oct 2007  
[Abstract]
[DOI] [Full Text]

Epigenetic natural variation in Arabidopsis thaliana
Vaughn MW,
Tanurdzic M,
Lippman Z,
Jiang H,
Carrasquillo R,
Rabinowicz PD,
Dedhia N,
McCombie WR,
Agier N,
Bulski A,
Colot V,
Doerge RW,
Martienssen RA

PLoS biology
  5 (7): e174; Jul 2007  
[Abstract]
[DOI] [Full Text]

The fission yeast Jmj2 reverses histone H3 lysine 4 trimethylation
Huarte M,
Lan F,
Kim TH,
Vaughn MW,
Zaratiegui BM,
Martienssen RA,
Buratowski S,
Shi Y

Journal of Biological Chemistry
  282 (30): 21662-21670; Jul 2007  
[Abstract]
[DOI] [Full Text] [PDF]

Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27
Turck F,
Roudier F,
Farrona S,
Martin-Magniette ML,
Guillaume E,
Buisine N,
Gagnot S,
Martienssen RA,
Coupland G,
Colot V

PLoS genetics
  3 (6): 855-866; Jun 2007  
[Abstract]
[DOI] [Full Text]

S-pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription
Lan F,
Zaratiegui M,
Villen J,
Vaughn MW,
Verdel A,
Huarte M,
Shi YJ,
Gygi SP,
Moazed D,
Martienssen RA,
Shi Y

Molecular cell
  26 (1): 89-101; Apr 13 2007  
[Abstract]
[DOI] [Full Text]

S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription
Lan F,
Zaratiegui M,
Villen J,
Vaughn MW,
Verdel A,
Huarte M,
Shi Y,
Gygi SP,
Moazed D,
Martienssen RA

Molecular cell
  26 (1): 89-101; Apr 13 2007  
[Abstract]
[DOI] [Full Text]

Transposable elements and the epigenetic regulation of the genome
Slotkin RK,
Martienssen R

Nature reviews. Genetics
  8 (4): 272-85; Apr 2007  
[Abstract]
[DOI] [Full Text]

Noncoding RNAs and gene silencing
Zaratiegui BM,
Irvine DV,
Martienssen RA

Cell
  128 (4): 763-76; Feb 23 2007  
[Abstract]
[DOI] [Full Text]

Identification of novel high-frequency DNA methylation changes in breast cancer
Ordway JM,
Budiman MA,
Korshunova Y,
Maloney RK,
Bedell JA,
Citek RW,
Bacher B,
Peterson S,
Rohlfing T,
Hall J,
Brown R,
Lakey N,
Doerge RW,
Martienssen RA,
Leon J,
McPherson JD,
Jeddeloh JA

PloS one
  2 (12): e1314; 2007  
[Abstract]
[DOI] [Full Text]

Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function
Murakami H,
Goto DB,
Toda T,
Chen ES,
Grewal SI,
Martienssen RA,
Yanagida M

PloS one
  2 (3): e317; 2007  
[Abstract]
[DOI] [Full Text]

Silent running: RNA interference and heterochromatic modification
Martienssen R,
Zaratiegui M,
Irvine D,
Goto D,
Slotkin K,
Tanurdzic M,
Lippman Z,
Vaughn M,
May B,
Cande Z,
Colot V,
Doerge RW

Chromosome Research
  15 (0): 20-21; 2007  
[Full Text]

Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
Ordway JM,
Bedell JA,
Citek RW,
Nunberg A,
Garrido A,
Kendall R,
Stevens JR,
Cao D,
Doerge RW,
Korshunova Y,
Holemon H,
McPherson JD,
Lakey N,
Leon J,
Martienssen RA,
Jeddeloh JA

Carcinogenesis
  27 (12): 2409-23; Dec 2006  
[Abstract]
[DOI] [Full Text]

Argonaute slicing is required for heterochromatic silencing and spreading
Irvine DV,
Zaratiegui M,
Tolia NH,
Goto DB,
Chitwood DH,
Vaughn MW,
Joshua-Tor L,
Martienssen RA

Science
  313 (5790): 1134-7; Aug 25 2006   NLM
[Abstract]
[DOI] [Full Text]

MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
Ronemus M,
Vaughn MW,
Martienssen RA

The Plant cell
  18 (7): 1559-74; Jul 2006  
[Abstract]
[DOI] [Full Text]

Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway
Garcia D,
Collier SA,
Byrne ME,
Martienssen RA

Current biology : CB
  16 (9): 933-8; May 9 2006  
[Abstract]
[DOI] [Full Text]

ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize
Bortiri E,
Chuck G,
Vollbrecht E,
Rocheford T,
Martienssen R,
Hake S

The Plant cell
  18 (3): 574-85; Mar 2006  
[Abstract]
[DOI] [Full Text]

Slicing and spreading of heterochromatic silencing by RNA interference
Locke SM,
Martienssen RA

Cold Spring Harbor symposia on quantitative biology
  71 (0): 497-503; 2006  
[Abstract]
[DOI] [Full Text]

A blueprint for a Human Epigenome Project: the AACR Human Epigenome Workshop
Jones PA,
Martienssen R

Cancer research
  65 (24): 11241-6; Dec 15 2005  
[Abstract]
[DOI] [Full Text]

Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats
May BP,
Lippman ZB,
Fang Y,
Spector DL,
Martienssen RA

PLoS genetics
  1 (6): e79; Dec 2005  
[Abstract]
[DOI] [Full Text]

Replication, repair, and reactivation
Vaughn MW,
Tanurdzic M,
Martienssen R

Developmental cell
  9 (6): 724-5; Dec 2005  
[Abstract]
[DOI] [Full Text]

Differential methylation of genes and repeats in land plants
Rabinowicz PD,
Citek R,
Budiman MA,
Nunberg A,
Bedell JA,
Lakey N,
OShaughnessy AL,
Nascimento LU,
McCombie WR,
Martienssen RA

Genome research
  15 (10): 1431-40; Oct 2005  
[Abstract]
[DOI] [Full Text]

Its a small RNA world, after all
Vaughn MW,
Martienssen R

Science
  309 (5740): 1525-6; Sep 2 2005  
[Abstract]
[DOI] [Full Text]

Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens
Nakayama N,
Arroyo JM,
Simorowski J,
May B,
Martienssen R,
Irish VF

The Plant cell
  17 (9): 2486-2506; Sep 2005  
[Abstract]
[DOI] [Full Text]

Architecture of floral branch systems in maize and related grasses
Vollbrecht E,
Springer PS,
Goh L,
Buckler ES,
Martienssen R

Nature
  436 (7054): 1119-26; Aug 25 2005  
[Abstract]
[DOI] [Full Text]

Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification
Li F,
Goto DB,
Zaratiegui M,
Tang X,
Martienssen R,
Cande WZ

Current biology : CB
  15 (16): 1448-57; Aug 23 2005  
[Abstract]
[DOI] [Full Text]

RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe
Martienssen RA,
Zaratiegui M,
Goto DB

Trends in genetics : TIG
  21 (8): 450-6; Aug 2005  
[Abstract]
[DOI] [Full Text]

RNA polymerase II is required for RNAi-dependent heterochromatin assembly
Kato H,
Goto DB,
Martienssen RA,
Urano T,
Furukawa K,
Murakami Y

Science
  309 (5733): 467-9; Jul 15 2005  
[Abstract]
[DOI] [Full Text]

Methylation filtration - A path to rapid gene discovery
Warek U,
Bedell J,
Martienssen R,
Rabinowicz P

Phytopathology
  95 (6): S109-S109; Jun 2005  
[Full Text]

The role of ARGONAUTE1 (AGO1) in meristem formation and identity
Kidner CA,
Martienssen RA

Developmental biology
  280 (2): 504-17; Apr 15 2005  
[Abstract]
[DOI] [Full Text]

Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana
Katari MS,
Balija V,
Wilson RK,
Martienssen RA,
McCombie WR

Genome research
  15 (4): 496-504; Apr 2005  
[Abstract]
[DOI] [Full Text]

Finding the right template: RNA Pol IV, a plant-specific RNA polymerase
Vaughn MW,
Martienssen RA

Molecular cell
  17 (6): 754-6; Mar 18 2005  
[Abstract]
[DOI] [Full Text]

Profiling DNA methylation patterns using genomic tiling microarrays
Lippman Z,
Gendrel AV,
Colot V,
Martienssen R

Nature methods
  2 (3): 219-24; Mar 2005  
[DOI] [Full Text]

Profiling histone modification patterns in plants using genomic tiling microarrays
Gendrel AV,
Lippman Z,
Martienssen R,
Colot V

Nature methods
  2 (3): 213-8; Mar 2005  
[DOI] [Full Text]

RNA interference: methylation mystery
Ronemus M,
Martienssen R

Nature
  433 (7025): 472-3; Feb 3 2005  
[DOI] [Full Text]

The developmental role of microRNA in plants
Kidner CA,
Martienssen RA

Current opinion in plant biology
  8 (1): 38-44; Feb 2005  
[Abstract]
[DOI] [Full Text]

Epigenomic mapping in Arabidopsis using tiling microarrays
Martienssen RA,
Doerge RW,
Colot V

Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology
  13 (3): 299-308; 2005  
[Abstract]
[DOI] [Full Text]

Genomic changes in synthetic Arabidopsis polyploids
Madlung A,
Tyagi AP,
Watson B,
Jiang H,
Kagochi T,
Doerge RW,
Martienssen R,
Comai L

The Plant journal : for cell and molecular biology
  41 (2): 221-30; Jan 2005  
[Abstract]
[DOI] [Full Text]

Global effects on gene expression in fission yeast by silencing and RNA interference machineries
Hansen KR,
Burns G,
Mata J,
Volpe TA,
Martienssen RA,
Bahler J,
Thon G

Molecular and cellular biology
  25 (2): 590-601; Jan 2005  
[Abstract]
[DOI] [Full Text]

Global expression changes resulting from loss of telomeric DNA in fission yeast
Mandell JG,
Bahler J,
Volpe TA,
Martienssen RA,
Cech TR

Genome biology
  6 (1): R1; 2005  
[Abstract]
[DOI] [Full Text]

Microarrays: Design, analysis, and applications in functional genomics
Tanurdžić M,
Doerge R,
Martienssen R

Archive of Oncology
  13 (3): 124-125; 2005  
[Abstract]
[DOI] [Full Text]

Molecular Biology: RNA polymerase II is required for RNAi-dependent heterochromatin assembly
Kato H,
Goto DB,
Martienssen RA,
Urano T,
Furukawa K,
Murakami Y

Science
  309 (5733): 467-469; 2005  
[Abstract]
[DOI]

Sorghum genome sequencing by methylation filtration
Bedell JA,
Budiman MA,
Nunberg A,
Citek RW,
Robbins D,
Jones J,
Flick E,
Rholfing T,
Fries J,
Bradford K,
McMenamy J,
Smith M,
Holeman H,
<