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29 Article(s) on File
Page 1 of 1
SeqHBase: a big data toolset for family based sequencing data analysis
He M,
Person TN,
Hebbring SJ,
Heinzen E,
Ye Z,
Schrodi SJ,
McPherson EW,
Lin SM,
Peissig PL,
Brilliant MH,
ORawe J,
Robison RJ,
Lyon GJ,
Wang K

J Med Genet
  (0): Jan 13 2015   Nlm
[Abstract]
[DOI] [Full Text]

Accounting for uncertainty in DNA sequencing data
ORawe JA,
Ferson S,
Lyon GJ

Trends Genet
  (0): Jan 8 2015   Nlm
[Abstract]
[DOI] [Full Text]

Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects
Myklebust LM,
Van Damme P,
Stove SI,
Dorfel MJ,
Abboud A,
Kalvik TV,
Grauffel C,
Jonckheere V,
Wu Y,
Swensen J,
Kaasa H,
Liszczak G,
Marmorstein R,
Reuter N,
Lyon GJ,
Gevaert K,
Arnesen T

Human Molecular Genetics
  (0): Dec 8 2014   Nlm
[Abstract]
[DOI] [Full Text]

Accurate de novo and transmitted indel detection in exome-capture data using microassembly
Narzisi G,
ORawe JA,
Iossifov I,
Fang H,
Lee Yh,
Wang Z,
Wu Y,
Lyon GJ,
Wigler M,
Schatz MC

Nature Methods
  11 (10): 1033-1036; Oct 2014   NLM
[Abstract]
[DOI] [Full Text]

Copy number variation in obsessive-compulsive disorder and tourette syndrome: a cross-disorder study
McGrath LM,
Yu D,
Marshall C,
Davis LK,
Thiruvahindrapuram B,
Li B,
Cappi C,
Gerber G,
Wolf A,
Schroeder FA,
Osiecki L,
ODushlaine C,
Kirby A,
Illmann C,
Haddad S,
Gallagher P,
Fagerness JA,
Barr CL,
Bellodi L,
Benarroch F,
Bienvenu OJ,
Black DW,
Bloch MH,
Bruun RD,
Budman CL,
Camarena B,
Cath DC,
Cavallini MC,
Chouinard S,
Coric V,
Cullen B,
Delorme R,
Denys D,
Derks EM,
Dion Y,
Rosario MC,
Eapen V,
Evans P,
Falkai P,
Fernandez TV,
Garrido H,
Geller D,
Grabe HJ,
Grados MA,
Greenberg BD,
Gross-Tsur V,
Grunblatt E,
Heiman GA,
Hemmings SM,
Herrera LD,
Hounie AG,
Jankovic J,
Kennedy JL,
King RA,
Kurlan R,
Lanzagorta N,
Leboyer M,
Leckman JF,
Lennertz L,
Lochner C,
Lowe TL,
Lyon GJ,
Macciardi F,
Maier W,
McCracken JT,
McMahon W,
Murphy DL,
Naarden AL,
Neale BM,
Nurmi E,
Pakstis AJ,
Pato MT,
Pato CN,
Piacentini J,
Pittenger C,
Pollak Y,
Reus VI,
Richter MA,
Riddle M,
Robertson MM,
Rosenberg D,
Rouleau GA,
Ruhrmann S,
Sampaio AS,
Samuels J,
Sandor P,
Sheppard B,
Singer HS,
Smit JH,
Stein DJ,
Tischfield JA,
Vallada H,
Veenstra-VanderWeele J,
Walitza S,
Wang Y,
Wendland JR,
Shugart YY,
Miguel EC,
Nicolini H,
Oostra BA,
Moessner R,
Wagner M,
Ruiz-Linares A,
Heutink P,
Nestadt G,
Freimer N,
Petryshen T,
Posthuma D,
Jenike MA,
Cox NJ,
Hanna GL,
Brentani H,
Scherer SW,
Arnold PD,
Stewart SE,
Mathews CA,
Knowles JA,
Cook EH,
Pauls DL,
Wang K,
Scharf JM

Journal of the American Academy of Child and Adolescent Psychiatry
  53 (8): 910-9; Aug 2014   Nlm
[Abstract]
[DOI] [Full Text]

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
Brownstein CA,
Beggs AH,
Homer N,
Merriman B,
Yu TW,
Flannery KC,
Dechene ET,
Towne MC,
Savage SK,
Price EN,
Holm IA,
Luquette LJ,
Lyon E,
Majzoub J,
Neupert P,
McCallie D,
Szolovits P,
Willard HF,
Mendelsohn NJ,
Temme R,
Finkel RS,
Yum SW,
Medne L,
Sunyaev SR,
Adzhubey I,
Cassa CA,
de Bakker PI,
Duzkale H,
Dworzy Ski P,
Fairbrother W,
Francioli L,
Funke BH,
Giovanni MA,
Handsaker RE,
Lage K,
Lebo MS,
Lek M,
Leshchiner I,
Macarthur DG,
McLaughlin HM,
Murray MF,
Pers TH,
Polak PP,
Raychaudhuri S,
Rehm HL,
Soemedi R,
Stitziel NO,
Vestecka S,
Supper J,
Gugenmus C,
Klocke B,
Hahn A,
Schubach M,
Menzel M,
Biskup S,
Freisinger P,
Deng M,
Braun M,
Perner S,
Smith RJ,
Andorf JL,
Huang J,
Ryckman K,
Sheffield VC,
Stone EM,
Bair T,
Black-Ziegelbein EA,
Braun TA,
Darbro B,
Deluca AP,
Kolbe DL,
Scheetz TE,
Shearer AE,
Sompallae R,
Wang K,
Bassuk AG,
Edens E,
Mathews K,
Moore SA,
Shchelochkov OA,
Trapane P,
Bossler A,
Campbell CA,
Heusel JW,
Kwitek A,
Maga T,
Panzer K,
Wassink T,
Van Daele D,
Azaiez H,
Booth K,
Meyer N,
Segal MM,
Williams MS,
Tromp G,
White P,
Corsmeier D,
Fitzgerald-Butt S,
Herman G,
Lamb-Thrush D,
McBride KL,
Newsom D,
Pierson CR,
Rakowsky AT,
Maver A,
Lovre IL,
Palanda IA,
Peterlin B,
Torkamani A,
Wedell A,
Huss M,
Alexeyenko A,
Lindvall JM,
Magnusson M,
Nilsson D,
Stranneheim H,
Taylan F,
Gilissen C,
Hoischen A,
van Bon B,
Yntema H,
Nelen M,
Zhang W,
Sager J,
Zhang L,
Blair K,
Kural D,
Cariaso M,
Lennon GG,
Javed A,
Agrawal S,
Ng PC,
Sandhu KS,
Krishna S,
Veeramachaneni V,
Isakov O,
Halperin E,
Friedman E,
Shomron N,
Glusman G,
Roach JC,
Caballero J,
Cox HC,
Mauldin D,
Ament SA,
Rowen L,
Richards DR,
Lucas FA,
Gonzalez-Garay ML,
Caskey CT,
Bai Y,
Huang Y,
Fang F,
Zhang Y,
Wang Z,
Barrera J,
Garcia-Lobo JM,
Gonzalez-Lamuno D,
Llorca J,
Rodriguez MC,
Varela I,
Reese MG,
De La Vega FM,
Kiruluta E,
Cargill M,
Hart RK,
Sorenson JM,
Lyon GJ,
Stevenson DA,
Bray BE,
Moore BM,
Eilbeck K,
Yandell M,
Zhao H,
Hou L,
Chen X,
Yan X,
Chen M,
Li C,
Yang C,
Gunel M,
Li P,
Kong Y,
Alexander AC,
Albertyn ZI,
Boycott KM,
Bulman DE,
Gordon PM,
Innes AM,
Knoppers BM,
Majewski J,
Marshall CR,
Parboosingh JS,
Sawyer SL,
Samuels ME,
Schwartzentruber J,
Kohane IS,
Margulies DM

Genome Biology
  15 (3): R53; Mar 25 2014   NLM
[Abstract]
[DOI] [Full Text]

Reducing INDEL calling errors in whole genome and exome sequencing data
Fang H,
Wu Y,
Narzisi G,
ORawe JA,
Barron LT,
Rosenbaum J,
Ronemus M,
Iossifov I,
Schatz MC,
Lyon GJ

Genome Med
  6 (10): 89; 2014   Nlm
[Abstract]
[DOI] [Full Text]

Integrating precision medicine in the study and clinical treatment of a severely mentally ill person
ORawe JA,
Fang H,
Rynearson S,
Robison R,
Kiruluta ES,
Higgins G,
Eilbeck K,
Reese MG,
Lyon GJ

PeerJ
  1 (0): Oct 3 2013   NLM
[Abstract]
[DOI] [Full Text]

Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement
Wang K,
Kim C,
Bradfield J,
Guo YF,
Toskala E,
Otieno FG,
Hou CP,
Thomas K,
Cardinale C,
Lyon GJ,
Golhar R,
Hakonarson H

Genome Medicine
  5 (0): Jul 2013   NLM
[Abstract]
[Full Text]

Genome-wide association study of Tourettes syndrome
Scharf JM,
Yu D,
Mathews CA,
Neale BM,
Stewart SE,
Fagerness JA,
Evans P,
Gamazon E,
Edlund CK,
Service SK,
Tikhomirov A,
Osiecki L,
Illmann C,
Pluzhnikov A,
Konkashbaev A,
Davis LK,
Han B,
Crane J,
Moorjani P,
Crenshaw AT,
Parkin MA,
Reus VI,
Lowe TL,
Rangel-Lugo M,
Chouinard S,
Dion Y,
Girard S,
Cath DC,
Smit JH,
King RA,
Fernandez TV,
Leckman JF,
Kidd KK,
Kidd JR,
Pakstis AJ,
State MW,
Herrera LD,
Romero R,
Fournier E,
Sandor P,
Barr CL,
Phan N,
Gross-Tsur V,
Benarroch F,
Pollak Y,
Budman CL,
Bruun RD,
Erenberg G,
Naarden AL,
Lee PC,
Weiss N,
Kremeyer B,
Berrio GB,
Campbell DD,
Cardona Silgado JC,
Ochoa WC,
Mesa Restrepo SC,
Muller H,
Valencia Duarte AV,
Lyon GJ,
Leppert M,
Morgan J,
Weiss R,
Grados MA,
Anderson K,
Davarya S,
Singer H,
Walkup J,
Jankovic J,
Tischfield JA,
Heiman GA,
Gilbert DL,
Hoekstra PJ,
Robertson MM,
Kurlan R,
Liu C,
Gibbs JR,
Singleton A,
Hardy J,
Strengman E,
Ophoff RA,
Wagner M,
Moessner R,
Mirel DB,
Posthuma D,
Sabatti C,
Eskin E,
Conti DV,
Knowles JA,
Ruiz-Linares A,
Rouleau GA,
Purcell S,
Heutink P,
Oostra BA,
McMahon WM,
Freimer NB,
Cox NJ,
Pauls DL

Mol Psychiatry
  18 (6): 721-728; Jun 2013  
[Abstract]
[DOI] [Full Text]

Whole-genome sequencing in an autism multiplex family
Shi L,
Zhang X,
Golhar R,
Otieno FG,
He M,
Hou C,
Kim C,
Keating B,
Lyon GJ,
Wang K,
Hakonarson H

Mol Autism
  4 (1): 8; Apr 18 2013   Nlm
[Abstract]
[DOI] [Full Text]

Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing
ORawe J,
Jiang T,
Sun GQ,
Wu YY,
Wang W,
Hu JC,
Bodily P,
Tian LF,
Hakonarson H,
Johnson WE,
Wei Z,
Wang K,
Lyon GJ

Genome Medicine
  5 (0): Mar 27 2013  
[Abstract]
[DOI] [Full Text]

Practical, ethical and regulatory considerations for the evolving medical and research genomics landscape
Lyon GJ,
Segal JP

Applied Translational Genomics
  2 (1): 34-40; Feb 26 2013  
[DOI] [Full Text]

Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder
Elia J,
Glessner JT,
Wang K,
Takahashi N,
Shtir CJ,
Hadley D,
Sleiman PM,
Zhang H,
Kim CE,
Robison R,
Lyon GJ,
Flory JH,
Bradfield JP,
Imielinski M,
Hou C,
Frackelton EC,
Chiavacci RM,
Sakurai T,
Rabin C,
Middleton FA,
Thomas KA,
Garris M,
Mentch F,
Freitag CM,
Steinhausen HC,
Todorov AA,
Reif A,
Rothenberger A,
Franke B,
Mick EO,
Roeyers H,
Buitelaar J,
Lesch KP,
Banaschewski T,
Ebstein RP,
Mulas F,
Oades RD,
Sergeant J,
Sonuga-Barke E,
Renner TJ,
Romanos M,
Romanos J,
Warnke A,
Walitza S,
Meyer J,
Pálmason H,
Seitz C,
Loo SK,
Smalley SL,
Biederman J,
Kent L,
Asherson P,
Anney RJ,
Gaynor JW,
Shaw P,
Devoto M,
White PS,
Grant SF,
Buxbaum JD,
Rapoport JL,
Williams NM,
Nelson SF,
Faraone SV,
Hakonarson H

Nature Genetics
  44 (1): 78-84; Dec 4 2012  
[Abstract]
[DOI] [Full Text]

Genome-wide linkage analysis of 972 bipolar pedigrees using single-nucleotide polymorphisms
Badner JA,
Koller D,
Foroud T,
Edenberg H,
Nurnberger JI,
Zandi PP,
Willour VL,
McMahon FJ,
Potash JB,
Hamshere M,
Grozeva D,
Green E,
Kirov G,
Jones I,
Jones L,
Craddock N,
Morris D,
Segurado R,
Gill M,
Sadovnick D,
Remick R,
Keck P,
Kelsoe J,
Ayub M,
MacLean A,
Blackwood D,
Liu CY,
Gershon ES,
McMahon W,
Lyon GJ,
Robinson R,
Ross J,
Byerley W

Mol Psychiatry
  17 (8): 818-826; Jul 2012  
[Abstract]
[DOI] [Full Text]

There is nothing incidental about unrelated findings
Lyon GJ

Personalized Medicine
  9 (2): 163-166; Mar 2012  
[DOI] [Full Text]

Personalized medicine: Bring clinical standards to human-genetics research
Lyon GJ

Nature
  482 (7385): 300-301; Feb 15 2012  
[DOI] [Full Text]

Erratum: Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency (American Journal of Human Genetics (2011) 89 (28-43))
Rope AF,
Wang K,
Evjenth R,
Xing J,
Johnston JJ,
Swensen JJ,
Johnson WE,
Moore B,
Huff CD,
Bird LM,
Carey JC,
Opitz JM,
Stevens CA,
Jiang T,
Schank C,
Fain HD,
Robison R,
Dalley B,
Chin S,
South ST,
Pysher TJ,
Jorde LB,
Hakonarson H,
Lillehaug JR,
Biesecker LG,
Yandell M,
Arnesen T,
Lyon GJ

Am J Hum Genet
  89 (2): 345; Aug 12 2011  
[DOI]

The Use of Emotional Dysregulation as an Endophenotype for Genetic studies in Adults with Attention-Deficit Hyperactivity Disorder
Robison RJ,
Reimherr FW,
Marchant BK,
Kondo D,
Lyon GJ,
Olsen J,
Christopherson D,
Pommerville C,
Tuya S,
Johnson A,
Coon H

Journal of ADHD and Related Disorders
  1 (4): 29-38; 2010  
[Full Text]

Complex tics and complex management in a case of severe Tourettes disorder (TD) in an adolescent
Lyon GJ,
Coffey BJ

J Child Adolesc Psychopharmacol
  19 (4): 469-74; Aug 2009  
[DOI] [Full Text]

Book Review: Treating Tourette Syndrome and Tic Disorders: A Guide for Practitioners
Lyon GJ,
Coffey B

J Child Adolesc Psychopharmacol
  18 (4): 411-412; 2008  
[DOI] [Full Text]

Book Review: Attention-Deficit Hyperactivity Disorder: A Handbook for Diagnosis and Treatment, 3rd ed.
Lyon GJ,
Coffey B

Journal of Clinical Psychiatry
  69 (6): 1023; 2008  
[Full Text]

Schizophrenia in childhood
Lyon GJ,
Koplewicz HS

Scientist
  21 (12): 22-25; 2007  
[Abstract]


Rational design of a global inhibitor of the virulence response in Staphylococcus aureus, based in part on localization of the site of inhibition to the receptor-histidine kinase, AgrC
Lyon GJ,
Mayville P,
Muir TW,
Novick RP

Proc Natl Acad Sci U S A
  97 (24): 13330-13335; 2000  
[Abstract]
[DOI] [Full Text]

Exfoliatin-producing strains define a fourth agr specificity group in Staphylococcus aureus
Jarraud S,
Lyon GJ,
Figueiredo AM,
Lina G,
Gerard L,
Vandenesch F,
Etienne J,
Muir TW,
Novick RP

J Bacteriol
  182 (22): 6517-6522; 2000  
[Abstract]
[DOI] [Full Text]

Isolation and characterization of the mouse gene for the type 3 iodothyronine deiodinase
Hernandez A,
Lyon GJ,
Schneider MJ,
St Germain DL

Endocrinology
  140 (1): 124-130; 1999  
[Abstract]
[DOI] [Full Text]

Role of the tyrosine kinase pyk2 in the integrin-dependent activation of human neutrophils by TNF
Fuortes M,
Melchior M,
Han H,
Lyon GJ,
Nathan C

J Clin Invest
  104 (3): 327-335; 1999  
[Abstract]
[DOI] [Full Text]

Localization of the type 3 iodothyronine deiodinase (DIO3) gene to human chromosome 14q32 and mouse chromosome 12F1
Hernandez A,
Park JP,
Lyon GJ,
Mohandas TK,
St Germain DL

Genomics
  53 (1): 119-121; 1998  
[DOI] [Full Text]

Mice deficient for the secreted glycoprotein SPARC/osteonectin/BM40 develop normally but show severe age-onset cataract formation and disruption of the lens
Gilmour DT,
Lyon GJ,
Carlton MB,
Sanes JR,
Cunningham JM,
Anderson JR,
Hogan BL,
Evans MJ,
Colledge WH

EMBO J
  17 (7): 1860-1870; 1998  
[Abstract]
[DOI] [Full Text]


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