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19 Article(s) on File
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Genome-wide copy number analysis of single cells
Baslan T,
Kendall JT,
Rodgers L,
Cox H,
Riggs M,
Stepansky A,
Troge JE,
Ravi K,
Esposito D,
Lakshmi B,
Wigler M,
Navin NE,
Hicks JB

Nat Protoc
  7 (6): 1024-41; May 3 2012   Nlm
[Abstract]
[DOI] [Full Text]

Reducing system noise in copy number data using principal components of self-self hybridizations
Lee YH,
Ronemus M,
Kendall J,
Lakshmi B,
Leotta A,
Levy D,
Esposito D,
Grubor V,
Ye K,
Wigler M,
Yamrom B

Proceedings of the National Academy of Sciences of the United States of America
  109 (3): E103-E110; Jan 2012  
[Abstract]
[DOI] [Full Text]

Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders
Levy D,
Ronemus M,
Yamrom B,
Lee YH,
Leotta A,
Kendall JT,
Marks S,
Lakshmi B,
Pai D,
Ye K,
Buja A,
Krieger A,
Yoon S,
Troge JE,
Rodgers ,
Iossifov I,
Wigler MH

Neuron
  70 (5): 886-897; Jun 8 2011  
[Abstract]
[DOI]

Microduplications of 16p11.2 are associated with schizophrenia
McCarthy SE,
Makarov V,
Kirov G,
Addington AM,
McClellan J,
Yoon S,
Perkins DO,
Dickel DE,
Kusenda M,
Krastoshevsky O,
Krause V,
Kumar RA,
Grozeva D,
Malhotra D,
Walsh T,
Zackai EH,
Kaplan P,
Ganesh J,
Krantz ID,
Spinner NB,
Roccanova P,
Bhandari A,
Pavon K,
Lakshmi B,
Leotta A,
Kendall JT,
Lee YH,
Vacic V,
Gary S,
Iakoucheva LM,
Crow TJ,
Christian SL,
Lieberman JA,
Stroup TS,
Lehtimaki T,
Puura K,
Haldeman-Englert C,
Pearl J,
Goodell M,
Willour VL,
DeRosse P,
Steele J,
Kassem L,
Wolff J,
Chitkara N,
McMahon FJ,
Malhotra AK,
Potash JB,
Schulze TG,
Nothen MM,
Cichon S,
Rietschel M,
Leibenluft E,
Kustanovich V,
Lajonchere CM,
Sutcliffe JS,
Skuse D,
Gill M,
Gallagher L,
Mendell NR,
Craddock N,
Owen MJ,
ODonovan MC,
Shaikh TH,
Susser E,
DeLisi LE,
Sullivan PF,
Deutsch CK,
Rapoport J,
Levy DL,
King MC,
Sebat J

Nature Genetics
  41 (11): 1223-1227; Nov 2009   PMCID: PMC2951180
[Abstract]
[DOI] [Full Text] [PDF]

Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA)
Grubor V,
Krasnitz A,
Troge JE,
Meth JL,
Lakshmi B,
Kendall JT,
Yamrom B,
Alex G,
Pai D,
Navin NE,
Hufnagel LA,
Lee YH,
Cook K,
Allen SL,
Rai KR,
Damle RN,
Calissano C,
Chiorazzi N,
Wigler MH,
Esposito D

Blood
  113 (6): 1294-1303; Feb 5 2009  
[Abstract]
[DOI] [Full Text] [PDF]

Classification method for microarray probe selection using sequence, thermodynamics and secondary structure parameters
Gupta L,
Kumar S,
Singh R,
Shaik R,
Dimitrova N,
Gorthi A,
Lakshmi B,
Pai D,
Kamalakaran S,
Zhao X,
Wigler MH

2008 19th International Conference on Pattern Recognition
  1; Dec 2008  
[Abstract]
[DOI] [Full Text]

High-Resolution Array-Based Comparative Genome Hybridization (CGH) Identifies Novel and Recurrent Regions in CLL
Grubor V,
Krasnitz A,
Troge JE,
Meth JL,
Lakshmi B,
Kendall JT,
Yamrom B,
Alex G,
Pai D,
Navin NE,
Hufnagel LA,
Lee YH,
Cook K,
Allen SL,
Rai KR,
Damle R,
Calissano C,
Chiorazzi N,
Wigler MH,
Esposito D

Blood
  112 (11): 717-717; Nov 2008  
[Abstract]
[Full Text]

The polarity protein Par6 induces cell proliferation and is overexpressed in breast cancer
Nolan ME,
Aranda V,
Lee S,
Lakshmi B,
Basu S,
Allred DC,
Muthuswamy SK

Cancer Res
  68 (20): 8201-9; Oct 15 2008  
[Abstract]
[DOI] [Full Text] [PDF]

Brk is coamplified with ErbB2 to promote proliferation in breast cancer
Xiang B,
Chatti K,
Qiu H,
Lakshmi B,
Krasnitz A,
Hicks JB,
Yu M,
Miller WT,
Muthuswamy SK

Proc Natl Acad Sci U S A
  105 (34): 12463-8; Aug 26 2008   PMCID: PMC2527934
[Abstract]
[DOI] [Full Text] [PDF]

Quality Assessment for Short Oligonucleotide Microarray Data Comment
Kendall JT,
Lakshmi B

Technometrics
  50 (3): 274-276; Aug 1 2008  
[DOI] [Full Text]

Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia
Walsh T,
McClellan JM,
McCarthy SE,
Addington AM,
Pierce SB,
Cooper GM,
Nord AS,
Kusenda M,
Malhotra D,
Bhandari A,
Stray SM,
Rippey CF,
Roccanova P,
Makarov V,
Lakshmi B,
Findling RL,
Sikich L,
Stromberg T,
Merriman B,
Gogtay N,
Butler P,
Eckstrand K,
Noory L,
Gochman P,
Long R,
Chen Z,
Davis S,
Baker C,
Eichler EE,
Meltzer PS,
Nelson SF,
Singleton AB,
Lee MK,
Rapoport JL,
King MC,
Sebat J

Science
  320 (5875): 539-43; Apr 25 2008  
[Abstract]
[DOI] [Full Text] [PDF]

Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer
Kendall JT,
Liu QA,
Bakleh A,
Krasnitz A,
Nguyen KC,
Lakshmi B,
Gerald W,
Powers S,
Mu D

Proc Natl Acad Sci U S A
  104 (42): 16663-16668; Oct 16 2007   PMCID: PMC2034240
[Abstract]
[DOI] [Full Text] [PDF]

Copy-Number Variants in Patients with a Strong Family History of Pancreatic Cancer
Lucito R,
Suresh S,
Walter K,
Pandey A,
Lakshmi B,
Krasnitz A,
Sebat J,
Wigler MH,
Klein AP,
Brune K,
Palmisano E,
Maitra A,
Goggins M,
Hruban RH

Cancer Biol Ther
  6 (10): 1592-9; Oct 2007  
[Abstract]
[DOI] [Full Text]

Strong Association of De Novo Copy Number Mutations with Autism
Sebat J,
Lakshmi B,
Malhotra D,
Troge JE,
Lese-Martin C,
Walsh T,
Yamrom B,
Yoon S,
Krasnitz A,
Kendall JT,
Leotta A,
Pai D,
Zhang R,
Lee YH,
Hicks JB,
Spence SJ,
Lee AT,
Puura K,
Lehtimaki T,
Ledbetter D,
Gregersen PK,
Bregman J,
Sutcliffe JS,
Jobanputra V,
Chung W,
Warburton D,
King MC,
Skuse D,
Geschwind DH,
Gilliam TC,
Ye K,
Wigler MH

Science
  316 (5823): 445-449; April 20 2007  
[Abstract]
[DOI] [Full Text] [PDF]

High-resolution analysis of genome copy number variation in autism
Sebat J,
Lakshmi B,
Troge J,
Martin C,
Spence S,
Ledbetter D,
Gilliam TC,
Ye K,
Geschwind D,
Sutcliffe J,
Wigler MH

International Journal of Developmental Neuroscience
  24 (8): 474; Dec 2006  
[DOI] [Full Text]

Novel patterns of genome rearrangement and their association with survival in breast cancer
Hicks JB,
Krasnitz A,
Lakshmi B,
Navin NE,
Riggs M,
Leibu E,
Esposito D,
Alexander J,
Troge JE,
Grubor V,
Yoon S,
Wigler MH,
Ye K,
Borresen-Dale AL,
Naume B,
Schlicting E,
Norton L,
Hagerstrom T,
Skoog L,
Auer G,
Månér S,
Lundin P,
Zetterberg A

Genome Res
  16 (12): 1465-79; Dec 2006  
[Abstract]
[DOI] [Full Text] [PDF]

Genome Analysis of CLL by Representational Oligonucleotide Microarray Analysis (ROMA)
Grubor VD,
Troge JE,
Meth JL,
Lakshmi B,
Yamron B,
Hufnagel LA,
Lee Y,
Kendall JT,
Pai D,
Lee A,
Gregersen P,
Yancopoulos S,
Allen S,
Rai KR,
Chiorazzi N,
Wigler MH,
Esposito D

ASH Annual Meeting Abstracts
  108 (11): 2085-; November 1, 2 2006  
[Abstract]
[Full Text]

Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens
Lakshmi B,
Hall IM,
Egan C,
Alexander J,
Leotta A,
Healy J,
Zender L,
Spector MS,
Xue W,
Lowe SW,
Wigler M,
Lucito R

Proc Natl Acad Sci U S A
  103 (30): 11234-9; Jul 25 2006   PMCID: PMC1544071
[Abstract]
[DOI] [Full Text] [PDF]

Large-scale copy number polymorphism in the human genome
Sebat J,
Lakshmi B,
Troge JE,
Alexander J,
Young J,
Lundin P,
Maner S,
Massa H,
Walker M,
Chi M,
Navin NE,
Lucito R,
Healy J,
Hicks JB,
Ye K,
Reiner A,
Gilliam TC,
Trask B,
Patterson N,
Zetterberg A,
Wigler MH

Science
  305 (5683): 525-8; Jul 23 2004  
[Abstract]
[DOI] [Full Text]


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