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24 Article(s) on File
Page 1 of 1
The contribution of de novo coding mutations to autism spectrum disorder
Iossifov I,
ORoak BJ,
Sanders SJ,
Ronemus M,
Krumm N,
Levy D,
Stessman HA,
Witherspoon KT,
Vives L,
Patterson KE,
Smith JD,
Paeper B,
Nickerson DA,
Dea J,
Dong S,
Gonzalez LE,
Mandell JD,
Mane SM,
Murtha MT,
Sullivan CA,
Walker MF,
Waqar Z,
Wei L,
Willsey AJ,
Yamrom B,
Lee YH,
Grabowska E,
Dalkic E,
Wang Z,
Marks S,
Andrews P,
Leotta A,
Kendall J,
Hakker I,
Rosenbaum J,
Ma B,
Rodgers L,
Troge J,
Narzisi G,
Yoon S,
Schatz MC,
Ye K,
McCombie WR,
Shendure J,
Eichler EE,
State MW,
Wigler M

Nature
  515 (7526): 2160-U136; Nov 13 2014   NLM
[Abstract]
[DOI] [Full Text]

Rapid phenotypic and genomic change in response to therapeutic pressure in prostate cancer inferred by high content analysis of single circulating tumor cells
Dago AE,
Stepansky A,
Carlsson A,
Luttgen M,
Kendall J,
Baslan T,
Kolatkar A,
Wigler M,
Bethel K,
Gross ME,
Hicks J,
Kuhn P

PLoS One
  9 (8): e101777; Aug 1 2014   Nlm
[Abstract]
[DOI] [Full Text]

Computational methods for DNA copy-number analysis of tumors
Kendall J,
Krasnitz A

Methods Mol Biol
  1176 (0): 243-59; Jul 2014 2014   Nlm
[Abstract]
[DOI] [Full Text]

Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation
Shi J,
Whyte WA,
Zepeda-Mendoza CJ,
Milazzo JP,
Shen C,
Roe JS,
Minder JL,
Mercan F,
Wang E,
Eckersley-Maslin MA,
Campbell AE,
Kawaoka S,
Shareef S,
Zhu Z,
Kendall J,
Muhar M,
Haslinger C,
Yu M,
Roeder RG,
Wigler MA,
Blobel GA,
Zuber J,
Spector DL,
Young RA,
Vakoc CR

Genes Dev
  27 (24): 264-273 ; Nov 27 2013   NLM
[Abstract]
[DOI] [Full Text]

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
Regulski M,
Lu Z,
Kendall J,
Donoghue MT,
Reinders J,
Llaca V,
Deschamps S,
Smith A,
Levy D,
McCombie WR,
Tingey S,
Rafalski A,
Hicks J,
Ware D,
Martienssen R

Genome Res
  (0): Jun 5 2013   NLM
[Abstract]
[DOI] [Full Text]

Rare De Novo Germline Copy-Number Variation in Testicular Cancer
Stadler ZK,
Esposito D,
Shah S,
Vijai J,
Yamrom B,
Levy D,
Lee YH,
Kendall J,
Leotta A,
Ronemus M,
Hansen N,
Sarrel K,
Rau-Murthy R,
Schrader K,
Kauff N,
Klein R,
Lipkin S,
Murali R,
Robson M,
Sheinfeld J,
Feldman D,
Bosl G,
Norton L,
Wigler M,
Offit K

The American Journal of Human Genetics
  91 (2): 379-383; Aug 10 2012  
[Abstract]
[DOI] [Full Text]

Genome-wide copy number analysis of single cells
Baslan T,
Kendall JT,
Rodgers L,
Cox H,
Riggs M,
Stepansky A,
Troge JE,
Ravi K,
Esposito D,
Lakshmi B,
Wigler M,
Navin NE,
Hicks JB

Nat Protoc
  7 (6): 1024-41; May 3 2012   Nlm
[Abstract]
[DOI] [Full Text]

De novo gene disruptions in children on the autistic spectrum
Iossifov I,
Ronemus M,
Levy D,
Wang Z,
Hakker I,
Rosenbaum J,
Yamrom B,
Lee YH,
Narzisi G,
Leotta A,
Kendall J,
Grabowska E,
Ma B,
Marks S,
Rodgers L,
Stepansky A,
Troge J,
Andrews P,
Bekritsky M,
Pradhan K,
Ghiban E,
Kramer M,
Parla J,
Demeter R,
Fulton LL,
Fulton RS,
Magrini VJ,
Ye K,
Darnell JC,
Darnell RB,
Mardis ER,
Wilson RK,
Schatz MC,
McCombie WR,
Wigler M

Neuron
  74 (2): 285-99; Apr 26 2012   Nlm
[Abstract]
[DOI] [Full Text]

Reducing system noise in copy number data using principal components of self-self hybridizations
Lee YH,
Ronemus M,
Kendall J,
Lakshmi B,
Leotta A,
Levy D,
Esposito D,
Grubor V,
Ye K,
Wigler M,
Yamrom B

Proceedings of the National Academy of Sciences of the United States of America
  109 (3): E103-E110; Jan 2012  
[Abstract]
[DOI] [Full Text]

Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders
Levy D,
Ronemus M,
Yamrom B,
Lee YH,
Leotta A,
Kendall JT,
Marks S,
Lakshmi B,
Pai D,
Ye K,
Buja A,
Krieger A,
Yoon S,
Troge JE,
Rodgers ,
Iossifov I,
Wigler MH

Neuron
  70 (5): 886-897; Jun 8 2011  
[Abstract]
[DOI]

DNA methylation patterns in luminal breast cancers differ from non-luminal subtypes and can identify relapse risk independent of other clinical variables
Kamalakaran S,
Varadan V,
Giercksky Russnes HE,
Levy D,
Kendall JT,
Janevski A,
Riggs M,
Banerjee N,
Synnestvedt M,
Schlichting E,
KÃ¥resen R,
Shama Prasada K,
Rotti H,
Rao R,
Rao L,
Eric Tang MH,
Satyamoorthy K,
Lucito R,
Wigler MH,
Dimitrova N,
Naume B,
Borresen-Dale AL,
Hicks JB

Molecular Oncology
  5 (1): 77-92; Feb 2011  
[Abstract]
[DOI] [Full Text] [PDF]

Tumour evolution inferred by single-cell sequencing
Navin NE,
Kendall JT,
Troge JE,
Andrews P,
Rodgers ,
McIndoo J,
Cook K,
Stepansky ,
Levy D,
Esposito D,
Muthuswamy L,
Krasnitz A,
McCombie WR,
Hicks JB,
Wigler MH

Nature
  (0): 2011   Elsevier
[Abstract]
[DOI] [Full Text]

Tracing Tumor Lineage and Progression through Genomic Copy Number Profiling at the Single Cell Level
Hicks JB,
Navin NE,
Kendall JT,
Levy D,
Wigler MH

Annals of Oncology
  21 (0): 96O; May 2010  
[Full Text]

A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding
Floer M,
Wang X,
Prabhu V,
Berrozpe G,
Narayan S,
Spagna D,
Alvarez D,
Kendall JT,
Krasnitz A,
Stepansky ,
Hicks JB,
Bryant GO,
Ptashne M

Cell
  141 (3): 407-418; Apr 29 2010   PMCID: PMC3032599
[Abstract]
[DOI] [Full Text] [PDF]

Inferring tumor progression from genomic heterogeneity
Navin NE,
Krasnitz A,
Rodgers L,
Cook K,
Meth JL,
Kendall JT,
Riggs M,
Eberling Y,
Troge JE,
Grubor V,
Levy D,
Lundin P,
Månér S,
Zetterberg A,
Hicks JB,
Wigler MH

Genome Research
  20 (1): 68-80; Jan 2010   PMCID: PMC2798832
[Abstract]
[DOI] [Full Text] [PDF]

Microduplications of 16p11.2 are associated with schizophrenia
McCarthy SE,
Makarov V,
Kirov G,
Addington AM,
McClellan J,
Yoon S,
Perkins DO,
Dickel DE,
Kusenda M,
Krastoshevsky O,
Krause V,
Kumar RA,
Grozeva D,
Malhotra D,
Walsh T,
Zackai EH,
Kaplan P,
Ganesh J,
Krantz ID,
Spinner NB,
Roccanova P,
Bhandari A,
Pavon K,
Lakshmi B,
Leotta A,
Kendall JT,
Lee YH,
Vacic V,
Gary S,
Iakoucheva LM,
Crow TJ,
Christian SL,
Lieberman JA,
Stroup TS,
Lehtimaki T,
Puura K,
Haldeman-Englert C,
Pearl J,
Goodell M,
Willour VL,
DeRosse P,
Steele J,
Kassem L,
Wolff J,
Chitkara N,
McMahon FJ,
Malhotra AK,
Potash JB,
Schulze TG,
Nothen MM,
Cichon S,
Rietschel M,
Leibenluft E,
Kustanovich V,
Lajonchere CM,
Sutcliffe JS,
Skuse D,
Gill M,
Gallagher L,
Mendell NR,
Craddock N,
Owen MJ,
ODonovan MC,
Shaikh TH,
Susser E,
DeLisi LE,
Sullivan PF,
Deutsch CK,
Rapoport J,
Levy DL,
King MC,
Sebat J

Nature Genetics
  41 (11): 1223-1227; Nov 2009   PMCID: PMC2951180
[Abstract]
[DOI] [Full Text] [PDF]

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing Dup removed 04/2012
Hodges E,
Smith AD,
Kendall JT,
Xuan Z,
Ravi K,
Rooks M,
Zhang MQ,
Ye K,
Bhattacharjee A,
Brizuela L,
McCombie WR,
Wigler MH,
Hannon GJ,
Hicks JB

Genome Res
  19 (9): 1593-1605; Sep 2009   PMCID: PMC2752124
[Abstract]
[DOI] [Full Text] [PDF]

Methylation detection oligonucleotide microarray analysis: a high-resolution method for detection of CpG island methylation
Kamalakaran S,
Kendall JT,
Zhao X,
Tang C,
Khan S,
Ravi K,
Auletta T,
Riggs M,
Wang Y,
Helland A,
Naume B,
Dimitrova N,
Borresen-Dale AL,
Hicks JB,
Lucito R

Nucl. Acids Res.
  37 (12): e89; Jul 2009   PMCID: PMC2709589
[Abstract]
[DOI] [Full Text] [PDF]

Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA)
Grubor V,
Krasnitz A,
Troge JE,
Meth JL,
Lakshmi B,
Kendall JT,
Yamrom B,
Alex G,
Pai D,
Navin NE,
Hufnagel LA,
Lee YH,
Cook K,
Allen SL,
Rai KR,
Damle RN,
Calissano C,
Chiorazzi N,
Wigler MH,
Esposito D

Blood
  113 (6): 1294-1303; Feb 5 2009  
[Abstract]
[DOI] [Full Text] [PDF]

Copy number alterations in pancreatic cancer identify recurrent PAK4 amplification
Chen S,
Auletta T,
Dovirak O,
Hutter C,
Kuntz K,
El-Ftesi S,
Kendall JT,
Han H,
Von Hoff DD,
Ashfaq R,
Maitra A,
Iacobuzio-Donahue CA,
Hruban RH,
Lucito R

Cancer Biol Ther
  7 (11): 1793-1798; Nov 21 2008  
[Abstract]
[Full Text]

High-Resolution Array-Based Comparative Genome Hybridization (CGH) Identifies Novel and Recurrent Regions in CLL
Grubor V,
Krasnitz A,
Troge JE,
Meth JL,
Lakshmi B,
Kendall JT,
Yamrom B,
Alex G,
Pai D,
Navin NE,
Hufnagel LA,
Lee YH,
Cook K,
Allen SL,
Rai KR,
Damle R,
Calissano C,
Chiorazzi N,
Wigler MH,
Esposito D

Blood
  112 (11): 717-717; Nov 2008  
[Abstract]
[Full Text]

Quality Assessment for Short Oligonucleotide Microarray Data Comment
Kendall JT,
Lakshmi B

Technometrics
  50 (3): 274-276; Aug 1 2008  
[DOI] [Full Text]

Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer
Kendall JT,
Liu QA,
Bakleh A,
Krasnitz A,
Nguyen KC,
Lakshmi B,
Gerald W,
Powers S,
Mu D

Proc Natl Acad Sci U S A
  104 (42): 16663-16668; Oct 16 2007   PMCID: PMC2034240
[Abstract]
[DOI] [Full Text] [PDF]

Strong Association of De Novo Copy Number Mutations with Autism
Sebat J,
Lakshmi B,
Malhotra D,
Troge JE,
Lese-Martin C,
Walsh T,
Yamrom B,
Yoon S,
Krasnitz A,
Kendall JT,
Leotta A,
Pai D,
Zhang R,
Lee YH,
Hicks JB,
Spence SJ,
Lee AT,
Puura K,
Lehtimaki T,
Ledbetter D,
Gregersen PK,
Bregman J,
Sutcliffe JS,
Jobanputra V,
Chung W,
Warburton D,
King MC,
Skuse D,
Geschwind DH,
Gilliam TC,
Ye K,
Wigler MH

Science
  316 (5823): 445-449; April 20 2007  
[Abstract]
[DOI] [Full Text] [PDF]


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