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6 Article(s) on File
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Comparative analysis of the transcriptome across distant species
Gerstein MB,
Rozowsky J,
Yan KK,
Wang D,
Cheng C,
Brown JB,
Davis CA,
Hillier L,
Sisu C,
Li JJ,
Pei B,
Harmanci AO,
Duff MO,
Djebali S,
Alexander RP,
Alver BH,
Auerbach R,
Bell K,
Bickel PJ,
Boeck ME,
Boley NP,
Booth BW,
Cherbas L,
Cherbas P,
Di C,
Dobin A,
Drenkow J,
Ewing B,
Fang G,
Fastuca M,
Feingold EA,
Frankish A,
Gao G,
Good PJ,
Guigo R,
Hammonds A,
Harrow J,
Hoskins RA,
Howald C,
Hu L,
Huang H,
Hubbard TJ,
Huynh C,
Jha S,
Kasper D,
Kato M,
Kaufman TC,
Kitchen RR,
Ladewig E,
Lagarde J,
Lai E,
Leng J,
Lu Z,
MacCoss M,
May G,
McWhirter R,
Merrihew G,
Miller DM,
Mortazavi A,
Murad R,
Oliver B,
Olson S,
Park PJ,
Pazin MJ,
Perrimon N,
Pervouchine D,
Reinke V,
Reymond A,
Robinson G,
Samsonova A,
Saunders GI,
Schlesinger F,
Sethi A,
Slack FJ,
Spencer WC,
Stoiber MH,
Strasbourger P,
Tanzer A,
Thompson OA,
Wan KH,
Wang G,
Wang H,
Watkins KL,
Wen J,
Wen K,
Xue C,
Yang L,
Yip K,
Zaleski C,
Zhang Y,
Zheng H,
Brenner SE,
Graveley BR,
Celniker SE,
Gingeras TR,
Waterston R

Nature
  512 (7515): 445-8; Aug 28 2014   Nlm
[Abstract]
[DOI] [Full Text]

Diversity and dynamics of the Drosophila transcriptome
Brown JB,
Boley N,
Eisman R,
May GE,
Stoiber MH,
Duff MO,
Booth BW,
Wen J,
Park S,
Suzuki AM,
Wan KH,
Yu C,
Zhang D,
Carlson JW,
Cherbas L,
Eads BD,
Miller D,
Mockaitis K,
Roberts J,
Davis CA,
Frise E,
Hammonds AS,
Olson S,
Shenker S,
Sturgill D,
Samsonova AA,
Weiszmann R,
Robinson G,
Hernandez J,
Andrews J,
Bickel PJ,
Carninci P,
Cherbas P,
Gingeras TR,
Hoskins RA,
Kaufman TC,
Lai EC,
Oliver B,
Perrimon N,
Graveley BR,
Celniker SE

Nature
  512 (7515): 393; Aug 28 2014   NLM
[Abstract]
[DOI] [Full Text]

The developmental transcriptome of Drosophila melanogaster
Graveley BR,
Brooks AN,
Carlson J,
Duff MO,
Landolin JM,
Yang L,
Artieri CG,
van Baren MJ,
Boley N,
Booth BW,
Brown JB,
Cherbas L,
Davis CA,
Dobin A,
Li RH,
Lin W,
Malone JH,
Mattiuzzo NR,
Miller D,
Sturgill D,
Tuch BB,
Zaleski C,
Zhang DY,
Blanchette M,
Dudoit S,
Eads B,
Green RE,
Hammonds A,
Jiang LC,
Kapranov P,
Langton L,
Perrimon N,
Sandler JE,
Wan KH,
Willingham A,
Zhang Y,
Zou Y,
Andrews J,
Bickel PJ,
Brenner SE,
Brent MR,
Cherbas P,
Gingeras TR,
Hoskins RA,
Kaufman TC,
Oliver B,
Celniker SE

Nature
  471 (7339): 473-479; Mar 2011   ISI PMC3075879
[Abstract]
[DOI]

The transcriptional diversity of 25 Drosophila cell lines
Cherbas L,
Willingham A,
Zhang D,
Yang L,
Zou Y,
Eads BD,
Carlson JW,
Landolin JM,
Kapranov P,
Dumais J,
Samsonova A,
Choi JH,
Roberts J,
Davis CA,
Tang H,
Van Baren MJ,
Ghosh S,
Dobin A,
Bell KG,
Lin W,
Langton L,
Duff MO,
Tenney AE,
Zaleski C,
Brent MR,
Hoskins RA,
Kaufman TC,
Andrews J,
Graveley BR,
Perrimon N,
Celniker SE,
Gingeras TR,
Cherbas P

Genome Research
  21 (2): 301-314; 2011   Elsevier PMC3032933
[Abstract]
[DOI]

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Roy S,
Ernst J,
Kharchenko PV,
Kheradpour P,
Negre N,
Eaton ML,
Landolin JM,
Bristow CA,
Ma LJ,
Lin MF,
Washietl S,
Arshinoff BI,
Ay F,
Meyer PE,
Robine N,
Washington NL,
Di Stefano L,
Berezikov E,
Brown CD,
Candeias R,
Carlson JW,
Carr A,
Jungreis I,
Marbach D,
Sealfon R,
Tolstorukov MY,
Will S,
Alekseyenko AA,
Artieri C,
Booth BW,
Brooks AN,
Dai Q,
Davis CA,
Duff MO,
Feng X,
Gorchakov AA,
Gu TT,
Henikoff JG,
Kapranov P,
Li RH,
MacAlpine HK,
Malone J,
Minoda A,
Nordman J,
Okamura K,
Perry M,
Powell SK,
Riddle NC,
Sakai A,
Samsonova A,
Sandler JE,
Schwartz YB,
Sher N,
Spokony R,
Sturgill D,
van Baren M,
Wan KH,
Yang L,
Yu C,
Feingold E,
Good P,
Guyer M,
Lowdon R,
Ahmad K,
Andrews J,
Berger B,
Brenner SE,
Brent MR,
Cherbas L,
Elgin SC,
Gingeras TR,
Grossman R,
Hoskins RA,
Kaufman TC,
Kent W,
Kuroda MI,
Orr-Weaver T,
Perrimon N,
Pirrotta V,
Posakony JW,
Ren B,
Russell S,
Cherbas P,
Graveley BR,
Lewis S,
Micklem G,
Oliver B,
Park PJ,
Celniker SE,
Henikoff S,
Karpen GH,
Lai EC,
MacAlpine DM,
Stein LD,
White KP,
Kellis M

Science
  330 (6012): 1787-1797; Dec 2010   PMC3192495
[Abstract]
[DOI] [Full Text] [PDF]

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
Stark A,
Lin MF,
Kheradpour P,
Pedersen JS,
Parts L,
Carlson JW,
Crosby MA,
Rasmussen MD,
Roy S,
Deoras AN,
Ruby JG,
Brennecke J,
Hodges E,
Hinrichs AS,
Caspi A,
Paten B,
Park SW,
Han MV,
Maeder ML,
Polansky BJ,
Robson BE,
Aerts S,
van Helden J,
Hassan B,
Gilbert DG,
Eastman DA,
Rice M,
Weir M,
Hahn MW,
Park Y,
Dewey CN,
Pachter L,
Kent WJ,
Haussler D,
Lai EC,
Bartel DP,
Hannon GJ,
Kaufman TC,
Eisen MB,
Clark AG,
Smith D,
Celniker SE,
Gelbart WM,
Kellis M

Nature
  450 (7167): 219-232; Nov 2007  
[Abstract]
[DOI] [Full Text] [PDF]


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