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6 Article(s) on File
Page 1 of 1
The tomato genome sequence provides insights into fleshy fruit evolution
Sato S,
Tabata S,
Hirakawa H,
Asamizu E,
Shirasawa K,
Isobe S,
Kaneko T,
Nakamura Y,
Shibata D,
Aoki K,
Egholm M,
Knight J,
Bogden R,
Li CB,
Shuang Y,
Xu X,
Pan SK,
Cheng SF,
Liu X,
Ren YY,
Wang J,
Albiero A,
Dal Pero F,
Todesco S,
Van Eck J,
Buels RM,
Bombarely A,
Gosselin JR,
Huang MY,
Leto JA,
Menda N,
Strickler S,
Mao LY,
Gao S,
Tecle IY,
York T,
Zheng Y,
Vrebalov JT,
Lee J,
Zhong SL,
Mueller LA,
Stiekema WJ,
Ribeca P,
Alioto T,
Yang WC,
Huang SW,
Du YC,
Zhang ZH,
Gao JC,
Guo YM,
Wang XX,
Li Y,
He J,
Li CY,
Cheng ZK,
Zuo JR,
Ren JF,
Zhao JH,
Yan LH,
Jiang HL,
Wang B,
Li HS,
Li ZJ,
Fu FY,
Chen BT,
Han B,
Feng Q,
Fan DL,
Wang Y,
Ling HQ,
Xue YB,
Ware D,
McCombie WR,
Lippman ZB,
Chia JM,
Jiang K,
Pasternak S,
Gelley L,
Kramer M,
Anderson LK,
Chang SB,
Royer SM,
Shearer LA,
Stack SM,
Rose JK,
Xu YM,
Eannetta N,
Matas AJ,
McQuinn R,
Tanksley SD,
Camara F,
Guigo R,
Rombauts S,
Fawcett J,
Van de Peer Y,
Zamir D,
Liang CB,
Spannagl M,
Gundlach H,
Bruggmann R,
Mayer K,
Jia ZQ,
Zhang JH,
Ye ZB,
Bishop GJ,
Butcher S,
Lopez-Cobollo R,
Buchan D,
Filippis I,
Abbott J,
Dixit R,
Singh M,
Singh A,
Pal JK,
Pandit A,
Singh PK,
Mahato AK,
Dogra V,
Gaikwad K,
Sharma TR,
Mohapatra T,
Singh NK,
Causse M,
Rothan C,
Schiex T,
Noirot C,
Bellec A,
Klopp C,
Delalande C,
Berges H,
Mariette J,
Frasse P,
Vautrin S,
Zouine M,
Latche A,
Rousseau C,
Regad F,
Pech JC,
Philippot M,
Bouzayen M,
Pericard P,
Osorio S,
del Carmen AF,
Monforte A,
Granell A,
Fernandez-Munoz R,
Conte M,
Lichtenstein G,
Carrari F,
De Bellis G,
Fuligni F,
Peano C,
Grandillo S,
Termolino P,
Pietrella M,
Fantini E,
Falcone G,
Fiore A,
Giuliano G,
Lopez L,
Facella P,
Perrotta G,
Daddiego L,
Bryan G,
Orozco M,
Pastor X,
Torrents D,
van Schriek K,
Feron RM,
van Oeveren J,
de Heer P,
daPonte L,
Jacobs-Oomen S,
Cariaso M,
Prins M,
van Eijk MJ,
Janssen A,
van Haaren MJ,
Jo SH,
Kim J,
Kwon SY,
Kim S,
Koo DH,
Lee S,
Hur CG,
Clouser C,
Rico A,
Hallab A,
Gebhardt C,
Klee K,
Jocker A,
Warfsmann J,
Gobel U,
Kawamura S,
Yano K,
Sherman JD,
Fukuoka H,
Negoro S,
Bhutty S,
Chowdhury P,
Chattopadhyay D,
Datema E,
Smit S,
Schijlen EW,
van de Belt J,
van Haarst JC,
Peters SA,
van Staveren MJ,
Henkens MH,
Mooyman PJ,
Hesselink T,
van Ham R,
Jiang GY,
Droege M,
Choi D,
Kang BC,
Kim BD,
Park M,
Yeom SI,
Lee YH,
Choi YD,
Li GC,
Gao JW,
Liu YS,
Huang SX,
Fernandez-Pedrosa V,
Collado C,
Zuniga S,
Wang GP,
Cade R,
Dietrich RA,
Rogers J,
Knapp S,
Fei ZJ,
White RA,
Thannhauser TW,
Giovannoni JJ,
Botella MA,
Gilbert L,
Gonzalez R,
Goicoechea JL,
Yu Y,
Kudrna D,
Collura K,
Wissotski M,
Wing R,
Schoof H,
Meyers BC,
Gurazada AB,
Green PJ,
Mathur S,
Vyas S,
Solanke AU,
Kumar R,
Gupta V,
Sharma AK,
Khurana P,
Khurana JP,
Tyagi AK,
Dalmay T,
Mohorianu I,
Walts B,
Chamala S,
Barbazuk WB,
Li JP,
Guo H,
Lee TH,
Wang YP,
Zhang D,
Paterson AH,
Wang XY,
Tang HB,
Barone A,
Chiusano ML,
Ercolano MR,
DAgostino N,
Di Filippo M,
Traini A,
Sanseverino W,
Frusciante L,
Seymour GB,
Elharam M,
Fu Y,
Hua A,
Kenton S,
Lewis J,
Lin SP,
Najar F,
Lai HS,
Qin BF,
Qu CM,
Shi RH,
White D,
White J,
Xing YB,
Yang KQ,
Yi J,
Yao ZY,
Zhou LP,
Roe BA,
Vezzi A,
DAngelo M,
Zimbello R,
Schiavon R,
Caniato E,
Rigobello C,
Campagna D,
Vitulo N,
Valle G,
Nelson DR,
De Paoli E,
Szinay D,
de Jong HH,
Bai YL,
Visser RG,
Lankhorst RM,
Beasley H,
McLaren K,
Nicholson C,
Riddle C,
Gianese G

Nature
  485 (7400): 635-641; May 2012  
[Abstract]
[DOI] [Full Text]

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Gerstein MB,
Lu ZJ,
Van Nostrand EL,
Cheng C,
Arshinoff BI,
Liu T,
Yip KY,
Robilotto R,
Rechtsteiner A,
Ikegami K,
Alves P,
Chateigner A,
Perry M,
Morris M,
Auerbach RK,
Feng X,
Leng J,
Vielle A,
Niu W,
Rhrissorrakrai K,
Agarwal A,
Alexander RP,
Barber G,
Brdlik CM,
Brennan J,
Brouillet JJ,
Carr A,
Cheung MS,
Clawson H,
Contrino S,
Dannenberg LO,
Dernburg AF,
Desai A,
Dick L,
Dose AC,
Du JA,
Egelhofer T,
Ercan S,
Euskirchen G,
Ewing B,
Feingold EA,
Gassmann R,
Good PJ,
Green P,
Gullier F,
Gutwein M,
Guyer MS,
Habegger L,
Han T,
Henikoff JG,
Henz SR,
Hinrichs A,
Holster H,
Hyman T,
Iniguez AL,
Janette J,
Jensen M,
Kato M,
Kent WJ,
Kephart E,
Khivansara V,
Khurana E,
Kim JK,
Kolasinska-Zwierz P,
Lai EC,
Latorre I,
Leahey A,
Lewis S,
Lloyd P,
Lochovsky L,
Lowdon RF,
Lubling Y,
Lyne R,
MacCoss M,
Mackowiak SD,
Mangone M,
McKay SJ,
Mecenas D,
Merrihew G,
Miller DM,
Muroyama A,
Murray JI,
Ooi SL,
Pham H,
Phippen T,
Preston EA,
Rajewsky N,
Ratsch G,
Rosenbaum H,
Rozowsky J,
Rutherford K,
Ruzanov P,
Sarov M,
Sasidharan R,
Sboner A,
Scheid P,
Segal E,
Shin HJ,
Shou C,
Slack FJ,
Slightam C,
Smith R,
Spencer WC,
Stinson EO,
Taing S,
Takasaki T,
Vafeados D,
Voronina K,
Wang GL,
Washington NL,
Whittle CM,
Wu BJ,
Yan KK,
Zeller G,
Zha Z,
Zhong M,
Zhou XL,
Ahringer J,
Strome S,
Gunsalus KC,
Micklem G,
Liu XS,
Reinke V,
Kim SK,
Hillier LW,
Henikoff S,
Piano F,
Snyder M,
Stein LD,
Lieb JD,
Waterston RH

Science
  330 (6012): 1775-1787; Dec 2010   PMC3142569
[Abstract]
[DOI] [Full Text] [PDF]

Detailed analysis of a contiguous 22-Mb region of the maize genome
Wei F,
Stein JC,
Liang C,
Zhang J,
Fulton RS,
Baucom RS,
De Paoli E,
Zhou S,
Yang L,
Han Y,
Pasternak S,
Narechania A,
Zhang L,
Yeh CT,
Ying K,
Nagel DH,
Collura K,
Kudrna D,
Currie J,
Lin J,
Kim H,
Angelova A,
Scara G,
Wissotski M,
Golser W,
Courtney L,
Kruchowski S,
Graves TA,
Rock SM,
Adams S,
Fulton LA,
Fronick C,
Courtney W,
Kramer M,
Spiegel L,
Nascimento L,
Kalyanaraman A,
Chaparro C,
Deragon JM,
Miguel PS,
Jiang N,
Wessler SR,
Green PJ,
Yu Y,
Schwartz DC,
Meyers BC,
Bennetzen JL,
Martienssen RA,
McCombie WR,
Aluru S,
Clifton SW,
Schnable PS,
Ware D,
Wilson RK,
Wing RA

PLoS genetics
  5 (11): e1000728; Nov 2009  
[Abstract]
[DOI] [Full Text]

Criteria for Annotation of Plant MicroRNAs
Meyers BC,
Axtell MJ,
Bartel B,
Bartel DP,
Baulcombe D,
Bowman JL,
Cao X,
Carrington JC,
Chen XM,
Green PJ,
Griffiths-Jones S,
Jacobsen SE,
Mallory AC,
Martienssen RA,
Poethig RS,
Qi YJ,
Vaucheret H,
Voinnet O,
Watanabe Y,
Weigel D,
Zhui JK

The Plant cell
  20 (12): 3186-3190; Dec 2008  
[Abstract]
[DOI] [Full Text]

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
Lu C,
Jeong DH,
Kulkarni K,
Pillay M,
Nobuta K,
German R,
Thatcher SR,
Maher C,
Zhang L,
Ware DH,
Liu B,
Cao X,
Meyers BC,
Green PJ

Proc Natl Acad Sci U S A
  105 (12): 4951-4956; Mar 2008   PMCID: PMC2290808
[Abstract]
[DOI] [Full Text] [PDF]

The rice annotation project database (RAP-DB): 2008 update
Tanaka T,
Antonio BA,
Kikuchi S,
Matsumoto T,
Nagamura Y,
Numa H,
Sakai H,
Wu J,
Itoh T,
Sasaki T,
Aono R,
Fujii Y,
Habara T,
Harada E,
Kanno M,
Kawahara Y,
Kawashima H,
Kubooka H,
Matsuya A,
Nakaoka H,
Saichi N,
Sanbonmatsu R,
Sato Y,
Shinso Y,
Suzuki M,
Takeda JI,
Tanino M,
Todokoro F,
Yamaguchi K,
Yamamoto N,
Yamasaki C,
Imanishi T,
Okido T,
Tada M,
Ikeo K,
Tateno Y,
Gojobori T,
Lin YC,
Wei FJ,
Hsing YI,
Zhao Q,
Han B,
Kramer MR,
McCombie RW,
Lonsdale D,
ODonovan CC,
Whitfield EJ,
Apweiler R,
Koyanagi KO,
Khurana JP,
Raghuvanshi S,
Singh NK,
Tyagi AK,
Haberer G,
Fujisawa M,
Hosokawa S,
Ito Y,
Ikawa H,
Shibata M,
Yamamoto M,
Bruskiewich RM,
Hoen DR,
Bureau TE,
Namiki N,
Ohyanagi H,
Sakai Y,
Nobushima S,
Sakata K,
Barrero RA,
Souvorov A,
Smith-White B,
Tatusova T,
An S,
An G,
Oota S,
Fuks G,
Messing J,
Christie KR,
Lieberherr D,
Kim H,
Zuccolo A,
Wing RA,
Nobuta K,
Green PJ,
Lu C,
Meyers BC,
Chaparro C,
Piegu B,
Panaud O

Nucleic Acids Research
  36 (0): D1028-D1033; Jan 2008   PMCID: PMC2238920
[Abstract]
[DOI] [Full Text] [PDF]


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