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23 Article(s) on File
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An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
Brownstein CA,
Beggs AH,
Homer N,
Merriman B,
Yu TW,
Flannery KC,
Dechene ET,
Towne MC,
Savage SK,
Price EN,
Holm IA,
Luquette LJ,
Lyon E,
Majzoub J,
Neupert P,
McCallie D,
Szolovits P,
Willard HF,
Mendelsohn NJ,
Temme R,
Finkel RS,
Yum SW,
Medne L,
Sunyaev SR,
Adzhubey I,
Cassa CA,
de Bakker PI,
Duzkale H,
Dworzy Ski P,
Fairbrother W,
Francioli L,
Funke BH,
Giovanni MA,
Handsaker RE,
Lage K,
Lebo MS,
Lek M,
Leshchiner I,
Macarthur DG,
McLaughlin HM,
Murray MF,
Pers TH,
Polak PP,
Raychaudhuri S,
Rehm HL,
Soemedi R,
Stitziel NO,
Vestecka S,
Supper J,
Gugenmus C,
Klocke B,
Hahn A,
Schubach M,
Menzel M,
Biskup S,
Freisinger P,
Deng M,
Braun M,
Perner S,
Smith RJ,
Andorf JL,
Huang J,
Ryckman K,
Sheffield VC,
Stone EM,
Bair T,
Black-Ziegelbein EA,
Braun TA,
Darbro B,
Deluca AP,
Kolbe DL,
Scheetz TE,
Shearer AE,
Sompallae R,
Wang K,
Bassuk AG,
Edens E,
Mathews K,
Moore SA,
Shchelochkov OA,
Trapane P,
Bossler A,
Campbell CA,
Heusel JW,
Kwitek A,
Maga T,
Panzer K,
Wassink T,
Van Daele D,
Azaiez H,
Booth K,
Meyer N,
Segal MM,
Williams MS,
Tromp G,
White P,
Corsmeier D,
Fitzgerald-Butt S,
Herman G,
Lamb-Thrush D,
McBride KL,
Newsom D,
Pierson CR,
Rakowsky AT,
Maver A,
Lovre IL,
Palanda IA,
Peterlin B,
Torkamani A,
Wedell A,
Huss M,
Alexeyenko A,
Lindvall JM,
Magnusson M,
Nilsson D,
Stranneheim H,
Taylan F,
Gilissen C,
Hoischen A,
van Bon B,
Yntema H,
Nelen M,
Zhang W,
Sager J,
Zhang L,
Blair K,
Kural D,
Cariaso M,
Lennon GG,
Javed A,
Agrawal S,
Ng PC,
Sandhu KS,
Krishna S,
Veeramachaneni V,
Isakov O,
Halperin E,
Friedman E,
Shomron N,
Glusman G,
Roach JC,
Caballero J,
Cox HC,
Mauldin D,
Ament SA,
Rowen L,
Richards DR,
Lucas FA,
Gonzalez-Garay ML,
Caskey CT,
Bai Y,
Huang Y,
Fang F,
Zhang Y,
Wang Z,
Barrera J,
Garcia-Lobo JM,
Gonzalez-Lamuno D,
Llorca J,
Rodriguez MC,
Varela I,
Reese MG,
De La Vega FM,
Kiruluta E,
Cargill M,
Hart RK,
Sorenson JM,
Lyon GJ,
Stevenson DA,
Bray BE,
Moore BM,
Eilbeck K,
Yandell M,
Zhao H,
Hou L,
Chen X,
Yan X,
Chen M,
Li C,
Yang C,
Gunel M,
Li P,
Kong Y,
Alexander AC,
Albertyn ZI,
Boycott KM,
Bulman DE,
Gordon PM,
Innes AM,
Knoppers BM,
Majewski J,
Marshall CR,
Parboosingh JS,
Sawyer SL,
Samuels ME,
Schwartzentruber J,
Kohane IS,
Margulies DM

Genome Biology
  15 (3): R53; Mar 25 2014   NLM
[Abstract]
[DOI] [Full Text]

Neuronal circuitry mechanism regulating adult quiescent neural stem-cell fate decision
Song J,
Zhong C,
Bonaguidi MA,
Sun GJ,
Hsu D,
Gu Y,
Meletis K,
Huang ZJ,
Ge S,
Enikolopov G,
Deisseroth K,
Luscher B,
Christian KM,
Ming GL,
Song H

Nature
  489 (7414): 150-154; Sep 6 2012  
[DOI] [Full Text]

Proffered Paper: Next Generation RNAi Mouse Models for Drug Discovery and Toxicology Assessment
Premsrirut P,
Fellmann C,
Hannon GJ,
Lowe SW,
Zuber J,
Elledge S

European Journal of Cancer
  48 (0): S14-S14; Jul 2012  
[Full Text]

Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy
Tan X,
Lu ZJ,
Gao G,
Xu QK,
Hu L,
Fellmann C,
Li MZ,
Qu HJ,
Lowe SW,
Hannon GJ,
Elledge SJ

Proceedings of the National Academy of Sciences of the United States of America
  109 (3): 869-874; Jan 2012  
[Abstract]
[DOI] [Full Text]

Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp
Bogdanove AJ,
Koebnik R,
Lu H,
Furutani A,
Angiuoli SV,
Patil PB,
Van Sluys MA,
Ryan RP,
Meyer DF,
Han SW,
Aparna G,
Rajaram M,
Delcher AL,
Phillippy AM,
Puiu D,
Schatz MC,
Shumway M,
Sommer DD,
Trapnell C,
Benahmed F,
Dimitrov G,
Madupu R,
Radune D,
Sullivan S,
Jha G,
Ishihara H,
Lee SW,
Pandey A,
Sharma V,
Sriariyanun M,
Szurek B,
Vera-Cruz CM,
Dorman KS,
Ronald PC,
Verdier V,
Dow JM,
Sonti RV,
Tsuge S,
Brendel VP,
Rabinowicz PD,
Leach JE,
White FF,
Salzberg SL

Journal of Bacteriology
  193 (19): 5450-5464; Oct 2011   PMC3187462
[Abstract]
[DOI]

Functional Identification of Optimized RNAi Triggers Using a Massively Parallel Sensor Assay
Fellmann C,
Zuber J,
McJunkin K,
Chang K,
Malone CD,
Dickins R,
Xu Q,
Hengartner M,
Elledge SJ,
Hannon GJ,
Lowe SW

Molecular Cell
  41 (6): 733-746; Mar 18 2011   Array
[Abstract]
[DOI]

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state
Lee TJ,
Pascuzzi PE,
Settlage SB,
Shultz RW,
Tanurdzic M,
Rabinowicz PD,
Menges M,
Zheng P,
Main D,
Murray JA,
Sosinski B,
Allen GC,
Martienssen RA,
Hanley-Bowdoin L,
Vaughn MW,
Thompson WF

PLoS genetics
  6 (6): e1000982; Jun 2010  
[Abstract]
[DOI] [Full Text]

Design of 240,000 orthogonal 25mer DNA barcode probes
Xu Q,
Schlabach MR,
Hannon GJ,
Elledge SJ

Proc Natl Acad Sci U S A
  106 (7): 2289-94; Feb 17 2009   PMCID: PMC2631075
[Abstract]
[DOI] [Full Text] [PDF]

Profiling essential genes in human mammary cells by multiplex RNAi screening
Silva JM,
Marran K,
Parker JS,
Silva J,
Golding M,
Schlabach MR,
Elledge SJ,
Hannon GJ,
Chang K

Science
  319 (5863): 617-20; Feb 1 2008   PMC2981870
[Abstract]
[DOI] [Full Text] [PDF]

Cancer proliferation gene discovery through functional Genomics
Schlabach MR,
Luo J,
Solimini NL,
Hu G,
Xu QK,
Li MZ,
Zhao ZM,
Smogorzewska A,
Sowa ME,
Ang XL,
Westbrook TF,
Liang AC,
Chang K,
Hackett JA,
Harper JW,
Hannon GJ,
Elledge SJ

Science
  319 (5863): 620-624; Feb 2008   PMC2981870
[Abstract]
[DOI] [Full Text] [PDF]

A functional genomic screen identifies a role for TAO1 kinase in spindle-checkpoint signalling
Draviam VM,
Stegmeier F,
Nalepa G,
Sowa ME,
Chen J,
Liang A,
Hannon GJ,
Sorger PK,
Harper JW,
Elledge SJ

Nature Cell Biology
  9 (5): 556-564; May 2007  
[Abstract]
[DOI] [Full Text] [PDF]

Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities
Stegmeier F,
Rape M,
Draviam VM,
Nalepa G,
Sowa ME,
Ang XL,
McDonald ER,
Li MZ,
Hannon GJ,
Sorger PK,
Kirschner MW,
Harper JW,
Elledge SJ

Nature
  446 (7138): 876-881; Apr 2007  
[Abstract]
[DOI] [Full Text]

Silencing and un-silencing of tetracycline-controlled genes in neurons
Zhu P,
Aller MI,
Baron U,
Cambridge S,
Bausen M,
Herb J,
Sawinski J,
Cetin A,
Osten P,
Nelson ML,
Kugler S,
Seeburg PH,
Sprengel R,
Hasan MT

PLoS ONE
  2 (6): e533; 2007  
[Abstract]
[DOI] [Full Text]

Lessons from Nature: microRNA-based shRNA libraries
Chang K,
Elledge SJ,
Hannon GJ

Nat Methods
  3 (9): 707-14; Sep 2006  
[Abstract]
[DOI] [Full Text] [PDF]

Second-generation shRNA libraries covering the mouse and human genomes
Silva JM,
Li MZ,
Chang K,
Ge W,
Golding MC,
Rickles RJ,
Siolas D,
Hu G,
Paddison PJ,
Schlabach MR,
Sheth N,
Bradshaw J,
Burchard J,
Kulkarni A,
Cavet G,
Sachidanandam R,
McCombie WR,
Cleary MA,
Elledge SJ,
Hannon GJ

Nat Genet
  37 (11): 1281-8; Nov 2005  
[Abstract]
[DOI] [Full Text]

An open letter to cancer researchers
Elledge SJ,
Hannon GJ

Science
  310 (5747): 439-41; Oct 2005  
[DOI] [Full Text] [PDF]

A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells
Stegmeier F,
Hu G,
Rickles RJ,
Hannon GJ,
Elledge SJ

Proceedings of the National Academy of Sciences of the United States of America
  102 (37): 13212-13217; Sep 2005  
[Abstract]
[Full Text]

A genetic screen for candidate tumor suppressors identifies REST
Westbrook TF,
Martin ES,
Schlabach MR,
Leng YM,
Liang AC,
Feng B,
Zhao JJ,
Roberts TM,
Mandel G,
Hannon GJ,
DePinho RA,
Chin L,
Elledge SJ

Cell
  121 (6): 837-848; Jun 2005  
[Abstract]
[DOI] [Full Text]

A resource for large-scale RNA-interference-based screens in mammals
Paddison PJ,
Silva JM,
Conklin DS,
Schlabach M,
Li M,
Aruleba S,
Balija V,
OShaughnessy A,
Gnoj L,
Scobie K,
Chang K,
Westbrook T,
Cleary M,
Sachidanandam R,
McCombie WR,
Elledge SJ,
Hannon GJ

Nature
  428 (6981): 427-31; Mar 25 2004  
[Abstract]
[DOI] [Full Text]

Dicer is essential for mouse development
Bernstein E,
Kim SY,
Carmell MA,
Murchison EP,
Alcorn H,
Li MZ,
Mills AA,
Elledge SJ,
Anderson KV,
Hannon GJ

Nature Genetics
  35 (3): 215-217; Nov 2003  
[Abstract]
[DOI] [Full Text]

Initial sequencing and comparative analysis of the mouse genome
Waterston RH,
Lindblad-Toh K,
Birney E,
Rogers J,
Abril JF,
Agarwal P,
Agarwala R,
Ainscough R,
Alexandersson M,
An P,
Antonarakis SE,
Attwood J,
Baertsch R,
Bailey J,
Barlow K,
Beck S,
Berry E,
Birren B,
Bloom T,
Bork P,
Botcherby M,
Bray N,
Brent MR,
Brown DG,
Brown SD,
Bult C,
Burton J,
Butler J,
Campbell RD,
Carninci P,
Cawley S,
Chiaromonte F,
Chinwalla AT,
Church DM,
Clamp M,
Clee C,
Collins FS,
Cook LL,
Copley RR,
Coulson A,
Couronne O,
Cuff J,
Curwen V,
Cutts T,
Daly M,
David R,
Davies J,
Delehaunty KD,
Deri J,
Dermitzakis ET,
Dewey C,
Dickens NJ,
Diekhans M,
Dodge S,
Dubchak I,
Dunn DM,
Eddy SR,
Elnitski L,
Emes RD,
Eswara P,
Eyras E,
Felsenfeld A,
Fewell GA,
Flicek P,
Foley K,
Frankel WN,
Fulton LA,
Fulton RS,
Furey TS,
Gage D,
Gibbs RA,
Glusman G,
Gnerre S,
Goldman N,
Goodstadt L,
Grafham D,
Graves TA,
Green ED,
Gregory S,
Guigo R,
Guyer M,
Hardison RC,
Haussler D,
Hayashizaki Y,
Hillier LW,
Hinrichs A,
Hlavina W,
Holzer T,
Hsu F,
Hua A,
Hubbard T,
Hunt A,
Jackson I,
Jaffe DB,
Johnson LS,
Jones M,
Jones TA,
Joy A,
Kamal M,
Karlsson EK,
Karolchik D,
Kasprzyk A,
Kawai J,
Keibler E,
Kells C,
Kent WJ,
Kirby A,
Kolbe DL,
Korf I,
Kucherlapati RS,
Kulbokas EJ,
Kulp D,
Landers T,
Leger JP,
Leonard S,
Letunic I,
Levine R,
Li J,
Li M,
Lloyd C,
Lucas S,
Ma B,
Maglott DR,
Mardis ER,
Matthews L,
Mauceli E,
Mayer JH,
McCarthy M,
McCombie WR,
McLaren S,
McLay K,
McPherson JD,
Meldrim J,
Meredith B,
Mesirov JP,
Miller W,
Miner TL,
Mongin E,
Montgomery KT,
Morgan M,
Mott R,
Mullikin JC,
Muzny DM,
Nash WE,
Nelson JO,
Nhan MN,
Nicol R,
Ning Z,
Nusbaum C,
OConnor MJ,
Okazaki Y,
Oliver K,
Larty EO,
Pachter L,
Parra G,
Pepin KH,
Peterson J,
Pevzner P,
Plumb R,
Pohl CS,
Poliakov A,
Ponce TC,
Ponting CP,
Potter S,
Quail M,
Reymond A,
Roe BA,
Roskin KM,
Rubin EM,
Rust AG,
Santos R,
Sapojnikov V,
Schultz B,
Schultz J,
Schwartz MS,
Schwartz S,
Scott C,
Seaman S,
Searle S,
Sharpe T,
Sheridan A,
Shownkeen R,
Sims S,
Singer JB,
Slater G,
Smit A,
Smith DR,
Spencer B,
Stabenau A,
Strange-Thomann NS,
Sugnet C,
Suyama M,
Tesler G,
Thompson J,
Torrents D,
Trevaskis E,
Tromp J,
Ucla C,
Vidal AU,
Vinson JP,
von Niederhausern AC,
Wade CM,
Wall M,
Weber RJ,
Weiss RB,
Wendl MC,
West AP,
Wetterstrand K,
Wheeler R,
Whelan S,
Wierzbowski J,
Willey D,
Williams S,
Wilson RK,
Winter E,
Worley KC,
Wyman D,
Yang S,
Yang SP,
Zdobnov EM,
Zody MC,
Lander ES

Nature
  420 (6915): 520-562; Dec 2002  
[Full Text]

Chk2 is a tumor suppressor that regulates apoptosis in both an ataxia telangiectasia mutated (ATM)-dependent and an ATM-independent manner
Hirao A,
Cheung A,
Duncan G,
Girard PM,
Elia AJ,
Wakeham A,
Okada H,
Sarkissian T,
Wong JA,
Sakai T,
de Stanchina E,
Bristow RG,
Suda T,
Lowe SW,
Jeggo PA,
Elledge SJ,
Mak TW

Molecular and Cellular Biology
  22 (18): 6521-6532; Sep 2002  
[Full Text]

Formation and Activation of a Cyclin E-Cdk2 Complex During the G(1)-Phase of the Human Cell-Cycle
Koff A,
Giordano A,
Desai D,
Yamashita K,
Harper JW,
Elledge S,
Nishimoto T,
Morgan DO,
Franza BR,
Roberts JM

Science
  257 (5077): 1689-1694; Sep 1992  
[Abstract]
[Full Text]


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