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10 Article(s) on File
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The Reactome pathway knowledgebase
Croft D,
Mundo AF,
Haw R,
Milacic M,
Weiser J,
Wu G,
Caudy M,
Garapati P,
Gillespie M,
Kamdar MR,
Jassal B,
Jupe S,
Matthews L,
May B,
Palatnik S,
Rothfels K,
Shamovsky V,
Song H,
Williams M,
Birney E,
Hermjakob H,
Stein L,
DEustachio P

Nucleic Acids Research
  42 (0): D472-7; Jan 2014   NLM
[Abstract]
[DOI] [Full Text]

Gramene 2013: comparative plant genomics resources
Monaco MK,
Stein J,
Naithani S,
Wei S,
Dharmawardhana P,
Kumari S,
Amarasinghe V,
Youens-Clark K,
Thomason J,
Preece J,
Pasternak S,
Olson A,
Jiao Y,
Lu Z,
Bolser D,
Kerhornou A,
Staines D,
Walts B,
Wu G,
DEustachio P,
Haw R,
Croft D,
Kersey PJ,
Stein L,
Jaiswal P,
Ware D

Nucleic Acids Research
  42 (0): D1193-9; Jan 2014   NLM
[Abstract]
[DOI] [Full Text]

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
Dharmawardhana P,
Ren L,
Amarasinghe V,
Monaco M,
Thomason J,
Ravenscroft D,
McCouch S,
Ware D,
Jaiswal P

Rice
  6 (1): 1-15; May 29 2013   Elsevier
[Abstract]
[DOI] [Full Text]

The Reactome BioMart
Haw RA,
Croft D,
Yung CK,
Ndegwa N,
DEustachio P,
Hermjakob H,
Stein LD

Database : the journal of biological databases and curation
  2011 (0): 2011  
[Abstract]
[Full Text]

BioMart Central Portal: an open database network for the biological community
Guberman JM,
Ai J,
Arnaiz O,
Baran J,
Blake A,
Baldock R,
Chelala C,
Croft D,
Cros A,
Cutts RJ,
Di Génova A,
Forbes S,
Fujisawa T,
Gadaleta E,
Goodstein DM,
Gundem G,
Haggarty B,
Haider S,
Hall M,
Harris T,
Haw R,
Hu S,
Hubbard S,
Hsu J,
Iyer V,
Jones P,
Katayama T,
Kinsella R,
Kong L,
Lawson D,
Liang Y,
Lopez-Bigas N,
Luo J,
Lush M,
Mason J,
Moreews F,
Ndegwa N,
Oakley D,
Perez-Llamas C,
Primig M,
Rivkin E,
Rosanoff S,
Shepherd R,
Simon R,
Skarnes B,
Smedley D,
Sperling L,
Spooner W,
Stevenson P,
Stone K,
Teague J,
Wang J,
Whitty B,
Wong DT,
Wong-Erasmus M,
Yao L,
Youens-Clark K,
Yung C,
Zhang J,
Kasprzyk A

Database : the journal of biological databases and curation
  2011 (0): 2011  
[Abstract]
[Full Text]

Reactome: A database of reactions, pathways and biological processes
Croft D,
OKelly G,
Wu G,
Haw R,
Gillespie M,
Matthews L,
Caudy M,
Garapati P,
Gopinath G,
Jassal B,
Jupe S,
Kalatskaya I,
MayMahajan S,
May B,
Ndegwa N,
Schmidt E,
Shamovsky V,
Yung C,
Birney E,
Hermjakob H,
DEustachio P,
Stein LD

Nucleic Acids Research
  39 (0): Jan 2011   ISI PMC3013646
[Abstract]
[DOI] [Full Text] [PDF]

The BioPAX community standard for pathway data sharing
Demir E,
Cary MP,
Paley S,
Fukuda K,
Lemer C,
Vastrik I,
Wu G,
DEustachio P,
Schaefer C,
Luciano J,
Schacherer F,
Martinez-Flores I,
Hu Z,
Jimenez-Jacinto V,
Joshi-Tope G,
Kandasamy K,
Lopez-Fuentes AC,
Mi H,
Pichler E,
Rodchenkov I,
Splendiani A,
Tkachev S,
Zucker J,
Gopinath G,
Rajasimha H,
Ramakrishnan R,
Shah I,
Syed M,
Anwar N,
Babur ,
Blinov M,
Brauner E,
Corwin D,
Donaldson S,
Gibbons F,
Goldberg R,
Hornbeck P,
Luna A,
Murray-Rust P,
Neumann E,
Reubenacker O,
Samwald M,
Van Iersel M,
Wimalaratne S,
Allen K,
Braun B,
Whirl-Carrillo M,
Cheung KH,
Dahlquist K,
Finney A,
Gillespie M,
Glass E,
Gong L,
Haw R,
Honig M,
Hubaut O,
Kane D,
Krupa S,
Kutmon M,
Leonard J,
Marks D,
Merberg D,
Petri V,
Pico A,
Ravenscroft D,
Ren L,
Shah N,
Sunshine M,
Tang R,
Whaley R,
Letovksy S,
Buetow KH,
Rzhetsky A,
Schachter V,
Sobral BS,
Dogrusoz U,
McWeeney S,
Aladjem M,
Birney E,
Collado-Vides J,
Goto S,
Hucka M,
Novère NL,
Maltsev N,
Pandey A,
Thomas P,
Wingender E,
Karp PD,
Sander C,
Bader GD

Nature Biotechnology
  28 (9): 935-942; 2010   PMCID: PMC3001121
[Abstract]
[DOI] [Full Text] [PDF]

Reactome knowledgebase of human biological pathways and processes
Matthews L,
Gopinath G,
Gillespie M,
Caudy M,
Croft D,
de Bono B,
Garapati P,
Hemish J,
Hermjakob H,
Jassal B,
Kanapin A,
Lewis S,
Mahajan S,
May B,
Schmidt E,
Vastrik I,
Wu G,
Birney E,
Stein LD,
DEustachio P

Nucleic Acids Res
  37 (0): D619-22; Jan 2009   PMCID: PMC2686536
[Abstract]
[DOI] [Full Text] [PDF]

Gramene: a growing plant comparative genomics resource
Liang C,
Jaiswal P,
Hebbard C,
Avraham S,
Buckler ES,
Casstevens T,
Hurwitz BL,
McCouch S,
Ni J,
Pujar A,
Ravenscroft D,
Ren L,
Spooner W,
Tecle I,
Thomason J,
Tung CW,
Wei X,
Yap I,
Youens-Clark K,
Ware DH,
Stein LD

Nucleic Acids Res
  36 (0): D947-53; Jan 2008   PMCID: PMC2238951
[Abstract]
[DOI] [Full Text] [PDF]

Reactome: a knowledge base of biologic pathways and processes
Vastrik I,
DEustachio P,
Schmidt E,
Joshi-Tope G,
Gopinath G,
Croft D,
de Bono B,
Gillespie M,
Jassal B,
Lewis S,
Matthews L,
Wu G,
Birney E,
Stein LD

Genome Biol
  8 (3): R39; 2007  
[Abstract]
[DOI] [Full Text] [PDF]


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