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7 Article(s) on File
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Increased frequency of de novo copy number variants in congenital heart disease by integrative analysis of single nucleotide polymorphism array and exome sequence data
Glessner JT,
Bick AG,
Ito K,
Homsy JG,
Rodriguez-Murillo L,
Fromer M,
Mazaika E,
Vardarajan B,
Italia M,
Leipzig J,
DePalma SR,
Golhar R,
Sanders SJ,
Yamrom B,
Ronemus M,
Iossifov I,
Willsey AJ,
State MW,
Kaltman JR,
White PS,
Shen Y,
Warburton D,
Brueckner M,
Seidman C,
Goldmuntz E,
Gelb BD,
Lifton R,
Seidman J,
Hakonarson H,
Chung WK

Circulation Research
  115 (10): 884-96; Oct 24 2014   Nlm
[DOI] [Full Text]

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
Harris RA,
Wang T,
Coarfa C,
Nagarajan RP,
Hong C,
Downey SL,
Johnson BE,
Fouse SD,
Delaney A,
Zhao Y,
Olshen A,
Ballinger T,
Zhou X,
Forsberg KJ,
Gu J,
Echipare L,
OGeen H,
Lister R,
Pelizzola M,
Xi Y,
Epstein CB,
Bernstein BE,
Hawkins RD,
Ren B,
Chung WY,
Gu H,
Bock C,
Gnirke A,
Zhang MQ,
Haussler D,
Ecker JR,
Li W,
Farnham PJ,
Waterland RA,
Meissner A,
Marra MA,
Hirst M,
Milosavljevic A,
Costello JF

Nature Biotechnology
  28 (10): 1097-1105; 2010   PMCID: PMC2955169
[DOI] [Full Text] [PDF]

Updates to the RMAP short-read mapping software
Smith AD,
Chung WY,
Hodges E,
Kendall JT,
Hannon GJ,
Hicks JB,
Xuan Z,
Zhang MQ

  25 (21): 2841-2842; Nov 1 2009   PMCID: PMC2895571
[DOI] [Full Text] [PDF]

Windshield splatter analysis with the Galaxy metagenomic pipeline
Pond SK,
Wadhawan S,
Chiaromonte F,
Ananda G,
Chung WY,
Taylor J,
Nekrutenko A

Genome Research
  19 (11): 2144-2153; Oct 9 2009   PMC2775585
[DOI] [Full Text] [PDF]

Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
Tyler DM,
Okamura K,
Chung WJ,
Hagen JW,
Berezikov E,
Hannon GJ,
Lai EC

Genes Dev
  22 (1): 26-36; Jan 1 2008   PMCID: PMC2151012
[DOI] [Full Text] [PDF]

Strong Association of De Novo Copy Number Mutations with Autism
Sebat J,
Lakshmi B,
Malhotra D,
Troge JE,
Lese-Martin C,
Walsh T,
Yamrom B,
Yoon S,
Krasnitz A,
Kendall JT,
Leotta A,
Pai D,
Zhang R,
Lee YH,
Hicks JB,
Spence SJ,
Lee AT,
Puura K,
Lehtimaki T,
Ledbetter D,
Gregersen PK,
Bregman J,
Sutcliffe JS,
Jobanputra V,
Chung W,
Warburton D,
King MC,
Skuse D,
Geschwind DH,
Gilliam TC,
Ye K,
Wigler MH

  316 (5823): 445-449; April 20 2007  
[DOI] [Full Text] [PDF]

Application of ROMA (representational oligonucleotide microarray analysis) to patients with cytogenetic rearrangements
Jobanputra V,
Sebat J,
Troge J,
Chung W,
Anyane-Yeboa K,
Wigler MH,
Warburton D

Genetics in Medicine
  7 (2): 111-118; Feb 2005  
[Full Text]

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