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24 Article(s) on File
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Reply to Reshef et al.: Falsifiability or bust
Kinney JB,
Atwal GS

Proceedings of the National Academy of Sciences of the United States of America
  111 (33): E3364; Aug 19 2014   Elsevier
[DOI] [Full Text]

Reply to Murrell et al.: Noise matters
Kinney JB,
Atwal GS

Proceedings of the National Academy of Sciences of the United States of America
  111 (21): E2161; May 27 2014   Elsevier
[Abstract]
[DOI] [Full Text]

Equitability, mutual information, and the maximal information coefficient
Kinney JB,
Atwal GS

Proceedings of the National Academy of Sciences of the United States of America
  111 (9): 3354-9; Mar 4 2014   Nlm
[Abstract]
[DOI] [Full Text]

Parametric Inference in the Large Data Limit Using Maximally Informative Models
Kinney JB,
Atwal GS

Neural Comput
  26 (4): 637-653; Jan 30 2014   Nlm
[Abstract]
[DOI] [Full Text]

Kerfuffle: a web tool for multi-species gene colocalization analysis
Aboukhalil R,
Fendler B,
Atwal GS

BMC Bioinformatics
  14 (0): Jan 2013   NLM
[Abstract]
[Full Text]

Utilizing RNA-Seq data for cancer network inference
Cai Y,
Fendler B,
Atwal GS

2012 IEEE International Workshop on Genomic Signal Processing and Statistics
  46-49; Dec 2-4 2012  
[Abstract]
[DOI] [Full Text]

Novel Foxo1-dependent transcriptional programs control T reg cell function
Ouyang W,
Liao W,
Luo CT,
Yin N,
Huse M,
Kim MV,
Peng M,
Chan P,
Ma Q,
Mo Y,
Meijer D,
Zhao K,
Rudensky AY,
Atwal G,
Zhang MQ,
Li MO

Nature
  491 (7425): 554-559; Nov 22 2012  
[Abstract]
[DOI] [Full Text]

Systematic deciphering of cancer genome networks
Fendler B,
Atwal G

Yale J Biol Med
  85 (3): 339-45; Sep 2012   NLM
[Abstract]
[Full Text]

Developmental Coordination of Gene Expression between Synaptic Partners During GABAergic Circuit Assembly in Cerebellar Cortex
Paul A,
Cai Y,
Atwal GS,
Huang ZJ

Front Neural Circuits
  6 (0): 37; Jun 26 2012   Nlm
[Abstract]
[DOI] [Full Text]

Identification of PHLPP1 as a Tumor Suppressor Reveals the Role of Feedback Activation in PTEN-Mutant Prostate Cancer Progression
Chen MH,
Pratt CP,
Zeeman ME,
Schultz N,
Taylor BS,
ONeill A,
Castillo-Martin M,
Nowak DG,
Naguib A,
Grace DM,
Murn J,
Navin N,
Atwal GS,
Sander C,
Gerald WL,
Cordon-Cardo C,
Newton AC,
Carver BS,
Trotman LC

Cancer Cell
  20 (2): 173-186; Aug 2011   PMC3176728
[Abstract]
[DOI] [Full Text]

Polymorphic variants in TSC1 and TSC2 and their association with breast cancer phenotypes
Mehta MS,
Vazquez A,
Kulkarni DA,
Kerrigan JE,
Atwal GS,
Metsugi S,
Toppmeyer DL,
Levine AJ,
Hirshfield KM

Breast Cancer Research and Treatment
  125 (3): 861-868; Feb 2011  
[Abstract]
[DOI] [Full Text]

Fine-scale detection of population-specific linkage disequilibrium using haplotype entropy in the human genome
Mizuno H,
Atwal GS,
Wang H,
Levine AJ,
Vazquez A

BMC Genet
  11 (0): 27; Apr 23 2010   PMCID: PMC2873552
[Abstract]
[DOI] [Full Text] [PDF]

Polymorphic variants in TSC1 and TSC2 and their association with breast cancer phenotypes
Mehta MS,
Vazquez A,
Kulkarni DA,
Kerrigan JE,
Atwal GS,
Metsugi S,
Toppmeyer DL,
Levine AJ,
Hirshfield KM

Breast Cancer Research and Treatment
  (0): 1-8; 2010  
[Abstract]
[DOI] [Full Text] [PDF]

Altered tumor formation and evolutionary selection of genetic variants in the human MDM4 oncogene
Atwal GS,
Kirchhoff T,
Bond EE,
Montagna M,
Menin C,
Bertorelle R,
Scaini MC,
Bartel F,
Böhnke A,
Pempe C,
Gradhand E,
Hauptmann S,
Offit K,
Levine AJ,
Bond GL

Proc Natl Acad Sci U S A
  106 (25): 10236-10241; Jun 23 2009   PMCID: PMC2700939
[Abstract]
[DOI] [Full Text] [PDF]

Single-nucleotide polymorphisms in the p53 pathway regulate fertility in humans
Kang HJ,
Feng Z,
Sun Y,
Atwal G,
Murphy ME,
Rebbeck TR,
Rosenwaks Z,
Levine AJ,
Hu W

Proc Natl Acad Sci U S A
  106 (24): 9761-6; Jun 16 2009   PMC2700980
[Abstract]
[DOI] [Full Text] [PDF]

An information-theoretic analysis of genetics, gender and age in cancer patients
Atwal GS,
Rabadan R,
Lozano G,
Strong LC,
Ruijs MW,
Schmidt MK,
vant Veer LJ,
Nevanlinna H,
Tommiska J,
Aittomaki K,
Bougeard G,
Frebourg T,
Levine AJ,
Bond GL

PLoS ONE
  3 (4): e1951; Apr 9 2008  
[Abstract]
[DOI]

p53: a new player in reproduction
Hu W,
Feng Z,
Atwal GS,
Levine AJ

Cell Cycle
  7 (7): 848-52; Apr 1 2008  
[Abstract]
[Full Text] [PDF]

Haplotype structure and selection of the MDM2 oncogene in humans
Atwal GS,
Bond GL,
Metsuyanim S,
Papa M,
Friedman E,
Distelman-Menachem T,
Ben Asher E,
Lancet D,
Ross DA,
Sninsky J,
White TJ,
Levine AJ,
Yarden R

Proc Natl Acad Sci U S A
  104 (11): 4524-9; Mar 13 2007  
[Abstract]
[DOI] [Full Text] [PDF]

Ambiguous model learning made unambiguous with 1/f priors
Atwal GS,
Bialek W

NIPS
  (0): Dec 2004  
[Abstract]
[DOI] [Full Text] [PDF]

Dynamic plasticity in coupled avian midbrain maps
Atwal GS

Phys Rev E Stat Nonlin Soft Matter Phys
  70 (6): 061904; Dec 2004  
[Abstract]
[DOI] [Full Text]

Polarization waves and superconducting instabilities in electron systems
Atwal GS,
Ashcroft NW

Physical Review B
  70 (10): 104513; 2004  
[Abstract]
[DOI] [Full Text]

Dynamical local-field factors and effective interactions in the two-dimensional electron liquid
Atwal GS,
Khalil IG,
Ashcroft NW

Physical review B. Condensed matter and materials physics
  67 (11): 115107; Mar 12 2003  
[Abstract]
[DOI] [Full Text] [PDF]

Correlation effects and the high-frequency spin susceptibility of an electron liquid: Exact limits
Atwal GS,
Ashcroft NW

Physical review B. Condensed matter and materials physics
  67 (23): 233104-233104.4; 2003  
[Abstract]
[DOI] [Full Text] [PDF]

Relaxation of an electron system: Conserving approximation
Atwal GS,
Ashcroft NW

Physical Review B
  65 (0): 115109; 2002  
[Abstract]
[DOI] [Full Text] [PDF]


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